RNA–Protein interactions for RNA: ENST00000299957.10

CASC4-201, Transcript of cancer susceptibility 4, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CASC4, Length 3,962 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-201ENST00000299957 NISCHQ9Y2I1 1504 aa23.87■■□□□ 1.41
CASC4-201ENST00000299957 DCAF8L2P0C7V8 631 aa23.3■■□□□ 1.32
CASC4-201ENST00000299957 SUPT5HO00267 1087 aaKnown RBP23.04■■□□□ 1.28
CASC4-201ENST00000299957 SHROOM4Q9ULL8 1493 aa22.97■■□□□ 1.27
CASC4-201ENST00000299957 EHMT2Q96KQ7 1210 aa22.21■■□□□ 1.15
CASC4-201ENST00000299957 PCGF6Q9BYE7 350 aa21.94■■□□□ 1.1
CASC4-201ENST00000299957 FAM9AQ8IZU1 332 aaPredicted RBP21.66■■□□□ 1.06
CASC4-201ENST00000299957 TTBK1Q5TCY1 1321 aaPredicted RBP21.42■■□□□ 1.02
CASC4-201ENST00000299957 PPARGC1BQ86YN6 1023 aaKnown RBP21.34■■□□□ 1.01
CASC4-201ENST00000299957 LOC105371045A0A1W2PR82 267 aa21.33■■□□□ 1
CASC4-201ENST00000299957 CHIC1Q5VXU3 224 aa21.21■□□□□ 0.99
CASC4-201ENST00000299957 HRCP23327 699 aa21.14■□□□□ 0.97
CASC4-201ENST00000299957 TRIM41Q8WV44 630 aa21.01■□□□□ 0.95
CASC4-201ENST00000299957 RANGAP1P46060 587 aaPredicted RBP20.85■□□□□ 0.93
CASC4-201ENST00000299957 CCER1Q8TC90 406 aaPredicted RBP20.73■□□□□ 0.91
CASC4-201ENST00000299957 TRIM26Q12899 539 aaPredicted RBP20.7■□□□□ 0.9
CASC4-201ENST00000299957 YTHDC1Q96MU7 727 aaKnown RBP20.55■□□□□ 0.88
CASC4-201ENST00000299957 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.47■□□□□ 0.87
CASC4-201ENST00000299957 ZEB1P37275 1124 aaPredicted RBP20.46■□□□□ 0.87
CASC4-201ENST00000299957 UBTFP17480 764 aaKnown RBP20.45■□□□□ 0.86
CASC4-201ENST00000299957 APLP2Q06481 763 aa20.37■□□□□ 0.85
CASC4-201ENST00000299957 MYO15BQ96JP2 1530 aa20.37■□□□□ 0.85
CASC4-201ENST00000299957 CENPBP07199 599 aaPredicted RBP20.24■□□□□ 0.83
CASC4-201ENST00000299957 HNRNPUL2Q1KMD3 747 aaKnown RBP20.19■□□□□ 0.82
CASC4-201ENST00000299957 ATP1B4Q9UN42 357 aaPredicted RBP20.05■□□□□ 0.8
CASC4-201ENST00000299957 ITGAEP38570 1179 aa20.02■□□□□ 0.8
CASC4-201ENST00000299957 DIEXFQ68CQ4 756 aaKnown RBP20■□□□□ 0.79
CASC4-201ENST00000299957 ZCCHC6Q5VYS8 1495 aaKnown RBP19.93■□□□□ 0.78
CASC4-201ENST00000299957 PELP1Q8IZL8 1130 aaKnown RBP19.92■□□□□ 0.78
CASC4-201ENST00000299957 GTF3C3Q9Y5Q9 886 aa19.9■□□□□ 0.78
CASC4-201ENST00000299957 ABCC9O60706 1549 aa19.86■□□□□ 0.77
CASC4-201ENST00000299957 PABPN1Q86U42 306 aaKnown RBP eCLIP19.83■□□□□ 0.76
CASC4-201ENST00000299957 SCAF1Q9H7N4 1312 aaKnown RBP19.76■□□□□ 0.75
CASC4-201ENST00000299957 DCAF1Q9Y4B6 1507 aa19.68■□□□□ 0.74
CASC4-201ENST00000299957 NEUROD1Q13562 356 aa19.68■□□□□ 0.74
CASC4-201ENST00000299957 ACIN1Q9UKV3 1341 aaKnown RBP19.64■□□□□ 0.73
CASC4-201ENST00000299957 CNGB1Q14028 1251 aaPredicted RBP19.58■□□□□ 0.73
CASC4-201ENST00000299957 SCRIBQ14160 1630 aa19.55■□□□□ 0.72
CASC4-201ENST00000299957 BCANQ96GW7 911 aa19.51■□□□□ 0.71
CASC4-201ENST00000299957 ZNF316A6NFI3 1004 aaPredicted RBP19.49■□□□□ 0.71
CASC4-201ENST00000299957 CSRNP3Q8WYN3 585 aa19.45■□□□□ 0.7
CASC4-201ENST00000299957 RSF1Q96T23 1441 aaPredicted RBP19.4■□□□□ 0.7
CASC4-201ENST00000299957 NEFLP07196 543 aa19.36■□□□□ 0.69
CASC4-201ENST00000299957 MIER1Q8N108 512 aa19.33■□□□□ 0.68
CASC4-201ENST00000299957 FAM50AQ14320 339 aaKnown RBP19.32■□□□□ 0.68
CASC4-201ENST00000299957 POLR3GLQ9BT43 218 aa19.29■□□□□ 0.68
CASC4-201ENST00000299957 P3H3Q8IVL6 736 aa19.28■□□□□ 0.68
CASC4-201ENST00000299957 ERICH6Q7L0X2 663 aa19.27■□□□□ 0.68
CASC4-201ENST00000299957 CECR2Q9BXF3 1484 aa19.16■□□□□ 0.66
CASC4-201ENST00000299957 HIRIP3Q9BW71 556 aaPredicted RBP19.16■□□□□ 0.66
CASC4-201ENST00000299957 CCDC180Q9P1Z9 1646 aa19.12■□□□□ 0.65
CASC4-201ENST00000299957 ARID3CA6NKF2 412 aa19.09■□□□□ 0.65
CASC4-201ENST00000299957 MYT1Q01538 1121 aa19.06■□□□□ 0.64
CASC4-201ENST00000299957 DDX10Q13206 875 aaKnown RBP19.03■□□□□ 0.64
CASC4-201ENST00000299957 RB1CC1Q8TDY2 1594 aa19.03■□□□□ 0.64
CASC4-201ENST00000299957 CEP162Q5TB80 1403 aa19.02■□□□□ 0.63
CASC4-201ENST00000299957 TRIM52Q96A61 297 aa18.97■□□□□ 0.63
CASC4-201ENST00000299957 SOGA1O94964 1423 aa18.95■□□□□ 0.62
CASC4-201ENST00000299957 FKBP8Q14318 412 aa18.93■□□□□ 0.62
CASC4-201ENST00000299957 ZNF326Q5BKZ1 582 aaKnown RBP18.87■□□□□ 0.61
CASC4-201ENST00000299957 CLIP1P30622 1438 aa18.85■□□□□ 0.61
CASC4-201ENST00000299957 SENP3-EIF4A1A0A087X0R7 540 aa18.85■□□□□ 0.61
CASC4-201ENST00000299957 ANP32CO43423 234 aa18.85■□□□□ 0.61
CASC4-201ENST00000299957 IRX6P78412 446 aaPredicted RBP18.83■□□□□ 0.61
CASC4-201ENST00000299957 MROH2BQ7Z745 1585 aa18.82■□□□□ 0.6
CASC4-201ENST00000299957 ABCC8Q09428 1581 aa18.8■□□□□ 0.6
CASC4-201ENST00000299957 CCDC88BA6NC98 1476 aa18.79■□□□□ 0.6
CASC4-201ENST00000299957 SIN3AQ96ST3 1273 aa18.73■□□□□ 0.59
CASC4-201ENST00000299957 CHIC2Q9UKJ5 165 aa18.73■□□□□ 0.59
CASC4-201ENST00000299957 TNIKQ9UKE5 1360 aa18.71■□□□□ 0.59
CASC4-201ENST00000299957 HNRNPUQ00839 825 aaKnown RBP eCLIP18.69■□□□□ 0.58
CASC4-201ENST00000299957 KANK4Q5T7N3 995 aaPredicted RBP18.67■□□□□ 0.58
CASC4-201ENST00000299957 WRNQ14191 1432 aaPredicted RBP eCLIP18.67■□□□□ 0.58
CASC4-201ENST00000299957 RUSC2Q8N2Y8 1516 aa18.65■□□□□ 0.58
CASC4-201ENST00000299957 FAM9BQ8IZU0 186 aa18.64■□□□□ 0.57
CASC4-201ENST00000299957 GOLGA3Q08378 1498 aa18.63■□□□□ 0.57
CASC4-201ENST00000299957 KCNH8Q96L42 1107 aa18.62■□□□□ 0.57
CASC4-201ENST00000299957 SUPT16HQ9Y5B9 1047 aaKnown RBP18.6■□□□□ 0.57
CASC4-201ENST00000299957 WIZO95785 1651 aa18.59■□□□□ 0.57
CASC4-201ENST00000299957 SALL2Q9Y467 1007 aaPredicted RBP18.58■□□□□ 0.57
CASC4-201ENST00000299957 CDK11AQ9UQ88 783 aaPredicted RBP18.57■□□□□ 0.56
CASC4-201ENST00000299957 FBLN2P98095 1184 aa18.56■□□□□ 0.56
CASC4-201ENST00000299957 TONSLQ96HA7 1378 aa18.54■□□□□ 0.56
CASC4-201ENST00000299957 ZNF777Q9ULD5 760 aaPredicted RBP18.54■□□□□ 0.56
CASC4-201ENST00000299957 MYT1LQ9UL68 1186 aa18.52■□□□□ 0.55
CASC4-201ENST00000299957 RRP7BPQ9NSQ0 103 aa18.51■□□□□ 0.55
CASC4-201ENST00000299957 NPM2Q86SE8 214 aaKnown RBP18.44■□□□□ 0.54
CASC4-201ENST00000299957 EEA1Q15075 1411 aa18.42■□□□□ 0.54
CASC4-201ENST00000299957 CEP164Q9UPV0 1460 aa18.42■□□□□ 0.54
CASC4-201ENST00000299957 BAZ1AQ9NRL2 1556 aaPredicted RBP18.4■□□□□ 0.54
CASC4-201ENST00000299957 SLC4A1APQ9BWU0 796 aaKnown RBP18.4■□□□□ 0.54
CASC4-201ENST00000299957 NBR1Q14596 966 aa18.38■□□□□ 0.53
CASC4-201ENST00000299957 MRS2Q9HD23 443 aa18.37■□□□□ 0.53
CASC4-201ENST00000299957 NACADO15069 1562 aa18.37■□□□□ 0.53
CASC4-201ENST00000299957 RTL5Q5HYW3 569 aaPredicted RBP18.35■□□□□ 0.53
CASC4-201ENST00000299957 DAXXQ9UER7 740 aaPredicted RBP18.34■□□□□ 0.53
CASC4-201ENST00000299957 VPS8Q8N3P4 1428 aa18.33■□□□□ 0.52
CASC4-201ENST00000299957 MTUS2Q5JR59 1369 aa18.31■□□□□ 0.52
CASC4-201ENST00000299957 KDM2AQ9Y2K7 1162 aa18.31■□□□□ 0.52
CASC4-201ENST00000299957 CCNB3Q8WWL7 1395 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms