RNA–Protein interactions for RNA: ENST00000261556.10

TMEM260-201, Transcript of transmembrane protein 260, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TMEM260, Length 4,264 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-201ENST00000261556 DCAF8L2P0C7V8 631 aa22.25■■□□□ 1.15
TMEM260-201ENST00000261556 PELP1Q8IZL8 1130 aaKnown RBP22.17■■□□□ 1.14
TMEM260-201ENST00000261556 MYT1Q01538 1121 aa21.68■■□□□ 1.06
TMEM260-201ENST00000261556 NISCHQ9Y2I1 1504 aa21.37■■□□□ 1.01
TMEM260-201ENST00000261556 HRCP23327 699 aa21.18■□□□□ 0.98
TMEM260-201ENST00000261556 PCGF6Q9BYE7 350 aa21.15■□□□□ 0.98
TMEM260-201ENST00000261556 PPARGC1BQ86YN6 1023 aaKnown RBP21.14■□□□□ 0.97
TMEM260-201ENST00000261556 SUPT5HO00267 1087 aaKnown RBP20.93■□□□□ 0.94
TMEM260-201ENST00000261556 SHROOM4Q9ULL8 1493 aa20.67■□□□□ 0.9
TMEM260-201ENST00000261556 SCAF1Q9H7N4 1312 aaKnown RBP20.51■□□□□ 0.87
TMEM260-201ENST00000261556 CENPBP07199 599 aaPredicted RBP20.39■□□□□ 0.85
TMEM260-201ENST00000261556 GTF3C3Q9Y5Q9 886 aa20.24■□□□□ 0.83
TMEM260-201ENST00000261556 EHMT2Q96KQ7 1210 aa20.2■□□□□ 0.82
TMEM260-201ENST00000261556 TTBK1Q5TCY1 1321 aaPredicted RBP20.18■□□□□ 0.82
TMEM260-201ENST00000261556 YTHDC1Q96MU7 727 aaKnown RBP20.14■□□□□ 0.81
TMEM260-201ENST00000261556 BCL11AQ9H165 835 aa20.04■□□□□ 0.8
TMEM260-201ENST00000261556 ZEB1P37275 1124 aaPredicted RBP20.02■□□□□ 0.8
TMEM260-201ENST00000261556 ACIN1Q9UKV3 1341 aaKnown RBP19.99■□□□□ 0.79
TMEM260-201ENST00000261556 NEUROD1Q13562 356 aa19.88■□□□□ 0.77
TMEM260-201ENST00000261556 ERICH6Q7L0X2 663 aa19.81■□□□□ 0.76
TMEM260-201ENST00000261556 FAM9AQ8IZU1 332 aaPredicted RBP19.74■□□□□ 0.75
TMEM260-201ENST00000261556 TRIM26Q12899 539 aaPredicted RBP19.7■□□□□ 0.74
TMEM260-201ENST00000261556 PRKCSHP14314 528 aaPredicted RBP19.67■□□□□ 0.74
TMEM260-201ENST00000261556 CCER1Q8TC90 406 aaPredicted RBP19.59■□□□□ 0.73
TMEM260-201ENST00000261556 APLP2Q06481 763 aa19.56■□□□□ 0.72
TMEM260-201ENST00000261556 DIEXFQ68CQ4 756 aaKnown RBP19.54■□□□□ 0.72
TMEM260-201ENST00000261556 LOC105371045A0A1W2PR82 267 aa19.45■□□□□ 0.7
TMEM260-201ENST00000261556 ANP32EQ9BTT0 268 aa19.41■□□□□ 0.7
TMEM260-201ENST00000261556 RANGAP1P46060 587 aaPredicted RBP19.37■□□□□ 0.69
TMEM260-201ENST00000261556 TRIM41Q8WV44 630 aa19.33■□□□□ 0.68
TMEM260-201ENST00000261556 CHIC1Q5VXU3 224 aa19.25■□□□□ 0.67
TMEM260-201ENST00000261556 CSRNP3Q8WYN3 585 aa19.25■□□□□ 0.67
TMEM260-201ENST00000261556 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.24■□□□□ 0.67
TMEM260-201ENST00000261556 BCANQ96GW7 911 aa19.21■□□□□ 0.67
TMEM260-201ENST00000261556 ATP1B4Q9UN42 357 aaPredicted RBP19.12■□□□□ 0.65
TMEM260-201ENST00000261556 UBTFP17480 764 aaKnown RBP19.09■□□□□ 0.65
TMEM260-201ENST00000261556 NEFLP07196 543 aa19.01■□□□□ 0.63
TMEM260-201ENST00000261556 EIF5BO60841 1220 aaKnown RBP19■□□□□ 0.63
TMEM260-201ENST00000261556 CCDC136Q96JN2 1154 aa18.83■□□□□ 0.61
TMEM260-201ENST00000261556 ANO8Q9HCE9 1232 aaPredicted RBP18.78■□□□□ 0.6
TMEM260-201ENST00000261556 MYO15BQ96JP2 1530 aa18.78■□□□□ 0.6
TMEM260-201ENST00000261556 RTN4Q9NQC3 1192 aaKnown RBP18.76■□□□□ 0.59
TMEM260-201ENST00000261556 RTL5Q5HYW3 569 aaPredicted RBP18.75■□□□□ 0.59
TMEM260-201ENST00000261556 ZNF316A6NFI3 1004 aaPredicted RBP18.74■□□□□ 0.59
TMEM260-201ENST00000261556 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.71■□□□□ 0.59
TMEM260-201ENST00000261556 MIER1Q8N108 512 aa18.71■□□□□ 0.59
TMEM260-201ENST00000261556 TSHZ2Q9NRE2 1034 aa18.71■□□□□ 0.59
TMEM260-201ENST00000261556 NBR1Q14596 966 aa18.68■□□□□ 0.58
TMEM260-201ENST00000261556 ABCC9O60706 1549 aa18.67■□□□□ 0.58
TMEM260-201ENST00000261556 PABPN1Q86U42 306 aaKnown RBP eCLIP18.64■□□□□ 0.57
TMEM260-201ENST00000261556 SUPT16HQ9Y5B9 1047 aaKnown RBP18.64■□□□□ 0.57
TMEM260-201ENST00000261556 DCAF1Q9Y4B6 1507 aa18.61■□□□□ 0.57
TMEM260-201ENST00000261556 FKBP8Q14318 412 aa18.61■□□□□ 0.57
TMEM260-201ENST00000261556 ITGAEP38570 1179 aa18.58■□□□□ 0.57
TMEM260-201ENST00000261556 DEKP35659 375 aaKnown RBP18.56■□□□□ 0.56
TMEM260-201ENST00000261556 HNRNPUL2Q1KMD3 747 aaKnown RBP18.52■□□□□ 0.55
TMEM260-201ENST00000261556 CDK11AQ9UQ88 783 aaPredicted RBP18.46■□□□□ 0.55
TMEM260-201ENST00000261556 SALL2Q9Y467 1007 aaPredicted RBP18.44■□□□□ 0.54
TMEM260-201ENST00000261556 RBM19Q9Y4C8 960 aaKnown RBP18.44■□□□□ 0.54
TMEM260-201ENST00000261556 MYT1LQ9UL68 1186 aa18.43■□□□□ 0.54
TMEM260-201ENST00000261556 CLSPNQ9HAW4 1339 aa18.41■□□□□ 0.54
TMEM260-201ENST00000261556 GLIPR1L2Q4G1C9 344 aa18.33■□□□□ 0.52
TMEM260-201ENST00000261556 CCDC180Q9P1Z9 1646 aa18.29■□□□□ 0.52
TMEM260-201ENST00000261556 SLC24A1O60721 1099 aa18.22■□□□□ 0.51
TMEM260-201ENST00000261556 PKNOX2Q96KN3 472 aa18.2■□□□□ 0.5
TMEM260-201ENST00000261556 IRX6P78412 446 aaPredicted RBP18.15■□□□□ 0.5
TMEM260-201ENST00000261556 PODXL2Q9NZ53 605 aa18.14■□□□□ 0.49
TMEM260-201ENST00000261556 POLR3GLQ9BT43 218 aa18.12■□□□□ 0.49
TMEM260-201ENST00000261556 TRIM52Q96A61 297 aa18.09■□□□□ 0.49
TMEM260-201ENST00000261556 NPM2Q86SE8 214 aaKnown RBP18.08■□□□□ 0.49
TMEM260-201ENST00000261556 ANP32AP39687 249 aaKnown RBP18.07■□□□□ 0.48
TMEM260-201ENST00000261556 DAXXQ9UER7 740 aaPredicted RBP18.06■□□□□ 0.48
TMEM260-201ENST00000261556 UBE2Q2Q8WVN8 375 aa18.05■□□□□ 0.48
TMEM260-201ENST00000261556 ERICH6BQ5W0A0 696 aa18.04■□□□□ 0.48
TMEM260-201ENST00000261556 TIMELESSQ9UNS1 1208 aa18.04■□□□□ 0.48
TMEM260-201ENST00000261556 IL27Q8NEV9 243 aa18.03■□□□□ 0.48
TMEM260-201ENST00000261556 CNGB1Q14028 1251 aaPredicted RBP18.03■□□□□ 0.48
TMEM260-201ENST00000261556 FBLN2P98095 1184 aa18.02■□□□□ 0.47
TMEM260-201ENST00000261556 VSIG10Q8N0Z9 540 aa18■□□□□ 0.47
TMEM260-201ENST00000261556 PLEKHG5O94827 1062 aa18■□□□□ 0.47
TMEM260-201ENST00000261556 ZBTB47Q9UFB7 747 aaPredicted RBP18■□□□□ 0.47
TMEM260-201ENST00000261556 FAM50AQ14320 339 aaKnown RBP17.97■□□□□ 0.47
TMEM260-201ENST00000261556 A0A0U1RQG5 324 aaPredicted RBP17.96■□□□□ 0.47
TMEM260-201ENST00000261556 NOP58Q9Y2X3 529 aaKnown RBP17.96■□□□□ 0.47
TMEM260-201ENST00000261556 NEFMP07197 916 aa17.91■□□□□ 0.46
TMEM260-201ENST00000261556 MSH5O43196 834 aa17.89■□□□□ 0.45
TMEM260-201ENST00000261556 LAS1LQ9Y4W2 734 aaKnown RBP17.87■□□□□ 0.45
TMEM260-201ENST00000261556 ARXQ96QS3 562 aa17.83■□□□□ 0.44
TMEM260-201ENST00000261556 ZCCHC6Q5VYS8 1495 aaKnown RBP17.82■□□□□ 0.44
TMEM260-201ENST00000261556 P3H3Q8IVL6 736 aa17.82■□□□□ 0.44
TMEM260-201ENST00000261556 ARID3CA6NKF2 412 aa17.78■□□□□ 0.44
TMEM260-201ENST00000261556 DDX10Q13206 875 aaKnown RBP17.78■□□□□ 0.44
TMEM260-201ENST00000261556 SLC4A1APQ9BWU0 796 aaKnown RBP17.77■□□□□ 0.44
TMEM260-201ENST00000261556 ANP32CO43423 234 aa17.75■□□□□ 0.43
TMEM260-201ENST00000261556 ARID4BQ4LE39 1312 aaPredicted RBP17.74■□□□□ 0.43
TMEM260-201ENST00000261556 SCRIBQ14160 1630 aa17.74■□□□□ 0.43
TMEM260-201ENST00000261556 HNRNPUQ00839 825 aaKnown RBP eCLIP17.73■□□□□ 0.43
TMEM260-201ENST00000261556 NAP1L5Q96NT1 182 aaPredicted RBP17.73■□□□□ 0.43
TMEM260-201ENST00000261556 KCNH8Q96L42 1107 aa17.71■□□□□ 0.43
TMEM260-201ENST00000261556 FANCIQ9NVI1 1328 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms