Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC15.56■□□□□ 0.08
TPM4P67936 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM4P67936 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM4P67936 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
TPM4P67936 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC15.56■□□□□ 0.08
TPM4P67936 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM4P67936 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.56■□□□□ 0.08
TPM4P67936 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TPM4P67936 LINC01623-201ENST00000440244 2458 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 KIF9-208ENST00000452770 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
TPM4P67936 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
TPM4P67936 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 KRT15-202ENST00000393974 3758 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 JDP2-203ENST00000435893 5401 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 CAD-201ENST00000264705 7265 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM4P67936 PAX2-203ENST00000370296 4140 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TPM4P67936 PAX2-205ENST00000428433 4126 ntTSL 5 BASIC15.55■□□□□ 0.08
TPM4P67936 LAMB3-201ENST00000356082 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM4P67936 MKL1-210ENST00000614754 3917 ntTSL 5 BASIC15.55■□□□□ 0.08
TPM4P67936 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC15.55■□□□□ 0.08
TPM4P67936 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
TPM4P67936 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TPM4P67936 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
TPM4P67936 DHX16-201ENST00000376437 1933 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TPM4P67936 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC15.55■□□□□ 0.08
TPM4P67936 AP002353.1-201ENST00000528257 1599 ntBASIC15.55■□□□□ 0.08
TPM4P67936 GFRA1-204ENST00000439649 9216 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
TPM4P67936 AC236430.1-201ENST00000402231 743 ntBASIC15.55■□□□□ 0.08
TPM4P67936 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.55■□□□□ 0.08
TPM4P67936 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.55■□□□□ 0.08
TPM4P67936 PMS2P2-201ENST00000425039 1128 ntBASIC15.55■□□□□ 0.08
TPM4P67936 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC15.55■□□□□ 0.08
TPM4P67936 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.55■□□□□ 0.08
TPM4P67936 RN7SL837P-201ENST00000463010 287 ntBASIC15.55■□□□□ 0.08
TPM4P67936 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.55■□□□□ 0.08
TPM4P67936 OARD1-208ENST00000469104 704 ntTSL 2 BASIC15.55■□□□□ 0.08
TPM4P67936 CHCHD2P2-201ENST00000503744 321 ntBASIC15.55■□□□□ 0.08
TPM4P67936 USP32P1-208ENST00000506594 1164 ntBASIC15.55■□□□□ 0.08
TPM4P67936 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.55■□□□□ 0.08
TPM4P67936 AP006547.1-201ENST00000563435 692 ntBASIC15.55■□□□□ 0.08
TPM4P67936 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.55■□□□□ 0.08
TPM4P67936 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC15.55■□□□□ 0.08
TPM4P67936 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.55■□□□□ 0.08
TPM4P67936 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TPM4P67936 COL11A1-210ENST00000512756 5442 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM4P67936 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
TPM4P67936 ASB7-201ENST00000332783 4985 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TPM4P67936 SECISBP2-201ENST00000339901 3320 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TPM4P67936 HSPA8P9-201ENST00000485881 1943 ntBASIC15.55■□□□□ 0.08
TPM4P67936 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
TPM4P67936 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
TPM4P67936 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
TPM4P67936 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.54■□□□□ 0.08
TPM4P67936 KCNMA1-287ENST00000640632 2808 ntTSL 2 BASIC15.54■□□□□ 0.08
TPM4P67936 ZNF747-201ENST00000252799 3936 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 RBM4-201ENST00000310092 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 UGGT2-203ENST00000376747 4832 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
TPM4P67936 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 SIGLEC1-201ENST00000344754 6720 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC15.54■□□□□ 0.08
TPM4P67936 ZNF124-202ENST00000472531 2243 ntTSL 2 BASIC15.54■□□□□ 0.08
TPM4P67936 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 JTB-202ENST00000356648 1040 ntTSL 2 BASIC15.54■□□□□ 0.08
TPM4P67936 MIR661-201ENST00000384842 89 ntBASIC15.54■□□□□ 0.08
TPM4P67936 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
TPM4P67936 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 OR2R1P-201ENST00000441404 914 ntBASIC15.54■□□□□ 0.08
TPM4P67936 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC15.54■□□□□ 0.08
TPM4P67936 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.54■□□□□ 0.08
TPM4P67936 AC100850.1-201ENST00000506768 649 ntBASIC15.54■□□□□ 0.08
TPM4P67936 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC15.54■□□□□ 0.08
TPM4P67936 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
TPM4P67936 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
TPM4P67936 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 GPR39-201ENST00000329321 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 FAM86JP-201ENST00000467239 1910 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 KCNAB2-202ENST00000341524 4207 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 TLK1-205ENST00000431350 5663 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 CLTC-202ENST00000393043 5292 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 ZMIZ1-202ENST00000446377 6686 ntTSL 5 BASIC15.54■□□□□ 0.08
TPM4P67936 DPP10-201ENST00000310323 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 AL390066.1-201ENST00000456414 2302 ntTSL 2 BASIC15.54■□□□□ 0.08
TPM4P67936 ENOX1-201ENST00000261488 2982 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TPM4P67936 FER1L5-207ENST00000641731 6294 ntAPPRIS ALT2 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms