RNA–Protein interactions for RNA: ENST00000465120.3

HOXB3-204, Transcript of homeobox B3, humanhuman

TSL 3 BASIC

Gene HOXB3, Length 943 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXB3-204ENST00000465120 NISCHQ9Y2I1 1504 aa38.23■■■■□ 3.71
HOXB3-204ENST00000465120 CCDC180Q9P1Z9 1646 aa34.2■■■■□ 3.07
HOXB3-204ENST00000465120 ABCC9O60706 1549 aa34.18■■■■□ 3.06
HOXB3-204ENST00000465120 RB1CC1Q8TDY2 1594 aa32.54■■■□□ 2.8
HOXB3-204ENST00000465120 DCAF8L2P0C7V8 631 aa32.46■■■□□ 2.79
HOXB3-204ENST00000465120 NACADO15069 1562 aa32.33■■■□□ 2.77
HOXB3-204ENST00000465120 PABPN1Q86U42 306 aaKnown RBP eCLIP31.9■■■□□ 2.7
HOXB3-204ENST00000465120 DNAJC5BQ9UF47 199 aa31.89■■■□□ 2.7
HOXB3-204ENST00000465120 MYO15BQ96JP2 1530 aa31.86■■■□□ 2.69
HOXB3-204ENST00000465120 UNC13AQ9UPW8 1703 aa31.76■■■□□ 2.67
HOXB3-204ENST00000465120 ZCCHC6Q5VYS8 1495 aaKnown RBP31.68■■■□□ 2.66
HOXB3-204ENST00000465120 DCAF1Q9Y4B6 1507 aa31.53■■■□□ 2.64
HOXB3-204ENST00000465120 BICRAQ9NZM4 1560 aa31.52■■■□□ 2.64
HOXB3-204ENST00000465120 SCRIBQ14160 1630 aa31.26■■■□□ 2.59
HOXB3-204ENST00000465120 SHROOM4Q9ULL8 1493 aa31.09■■■□□ 2.57
HOXB3-204ENST00000465120 CC2D2AQ9P2K1 1620 aa30.83■■■□□ 2.53
HOXB3-204ENST00000465120 EIF4G1Q04637 1599 aaKnown RBP30.79■■■□□ 2.52
HOXB3-204ENST00000465120 CECR2Q9BXF3 1484 aa30.75■■■□□ 2.51
HOXB3-204ENST00000465120 NCAPD3P42695 1498 aa29.84■■■□□ 2.37
HOXB3-204ENST00000465120 SMARCA4P51532 1647 aa29.79■■■□□ 2.36
HOXB3-204ENST00000465120 ATAD2BQ9ULI0 1458 aa29.79■■■□□ 2.36
HOXB3-204ENST00000465120 SMARCA2P51531 1590 aa29.72■■■□□ 2.35
HOXB3-204ENST00000465120 BAZ1AQ9NRL2 1556 aaPredicted RBP29.68■■■□□ 2.34
HOXB3-204ENST00000465120 HMGXB3Q12766 1538 aa29.61■■■□□ 2.33
HOXB3-204ENST00000465120 BAZ1BQ9UIG0 1483 aaKnown RBP29.55■■■□□ 2.32
HOXB3-204ENST00000465120 ERCC6Q03468 1493 aa29.53■■■□□ 2.32
HOXB3-204ENST00000465120 MROH2BQ7Z745 1585 aa29.47■■■□□ 2.31
HOXB3-204ENST00000465120 PEG3Q9GZU2 1588 aa29.43■■■□□ 2.3
HOXB3-204ENST00000465120 NESP48681 1621 aa29.38■■■□□ 2.29
HOXB3-204ENST00000465120 CUX2O14529 1486 aa29.33■■■□□ 2.29
HOXB3-204ENST00000465120 DNAJC5Q9H3Z4 198 aa29.19■■■□□ 2.26
HOXB3-204ENST00000465120 LAMC3Q9Y6N6 1575 aa29.16■■■□□ 2.26
HOXB3-204ENST00000465120 WIZO95785 1651 aa29.15■■■□□ 2.26
HOXB3-204ENST00000465120 PDS5BQ9NTI5 1447 aa29.04■■■□□ 2.24
HOXB3-204ENST00000465120 CADPSQ9ULU8 1353 aa28.99■■■□□ 2.23
HOXB3-204ENST00000465120 KIF21AQ7Z4S6 1674 aa28.98■■■□□ 2.23
HOXB3-204ENST00000465120 THOC2Q8NI27 1593 aaKnown RBP28.97■■■□□ 2.23
HOXB3-204ENST00000465120 RSF1Q96T23 1441 aaPredicted RBP28.92■■■□□ 2.22
HOXB3-204ENST00000465120 TOP2AP11388 1531 aaKnown RBP28.75■■■□□ 2.19
HOXB3-204ENST00000465120 MRC2Q9UBG0 1479 aa28.75■■■□□ 2.19
HOXB3-204ENST00000465120 CEP164Q9UPV0 1460 aa28.69■■■□□ 2.18
HOXB3-204ENST00000465120 FANCD2Q9BXW9 1451 aa28.66■■■□□ 2.18
HOXB3-204ENST00000465120 CFTRP13569 1480 aa28.65■■■□□ 2.18
HOXB3-204ENST00000465120 WDR62O43379 1518 aa28.63■■■□□ 2.17
HOXB3-204ENST00000465120 CCDC88BA6NC98 1476 aa28.46■■■□□ 2.15
HOXB3-204ENST00000465120 URB2Q14146 1524 aaKnown RBP28.38■■■□□ 2.13
HOXB3-204ENST00000465120 PRDM2Q13029 1718 aa28.35■■■□□ 2.13
HOXB3-204ENST00000465120 OSCARQ8IYS5 282 aa28.12■■■□□ 2.09
HOXB3-204ENST00000465120 TOPBP1Q92547 1522 aa28.12■■■□□ 2.09
HOXB3-204ENST00000465120 TRIM41Q8WV44 630 aa28.11■■■□□ 2.09
HOXB3-204ENST00000465120 IFT140Q96RY7 1462 aa28.09■■■□□ 2.09
HOXB3-204ENST00000465120 ABCC8Q09428 1581 aa28.08■■■□□ 2.09
HOXB3-204ENST00000465120 ZNF608Q9ULD9 1512 aaPredicted RBP28.03■■■□□ 2.08
HOXB3-204ENST00000465120 DNMBPQ6XZF7 1577 aa28.02■■■□□ 2.08
HOXB3-204ENST00000465120 SUPT5HO00267 1087 aaKnown RBP27.94■■■□□ 2.06
HOXB3-204ENST00000465120 EIF4G3O43432 1585 aaKnown RBP27.86■■■□□ 2.05
HOXB3-204ENST00000465120 AQRO60306 1485 aaKnown RBP eCLIP27.83■■■□□ 2.053e-8■■■■□ 19.6
HOXB3-204ENST00000465120 POLA1P09884 1462 aaPredicted RBP27.83■■■□□ 2.05
HOXB3-204ENST00000465120 TARBP1Q13395 1621 aaKnown RBP27.82■■■□□ 2.04
HOXB3-204ENST00000465120 RAD54L2Q9Y4B4 1467 aa27.77■■■□□ 2.04
HOXB3-204ENST00000465120 SOGA1O94964 1423 aa27.77■■■□□ 2.04
HOXB3-204ENST00000465120 FBLN2P98095 1184 aa27.75■■■□□ 2.03
HOXB3-204ENST00000465120 TDRD9Q8NDG6 1382 aaKnown RBP27.71■■■□□ 2.03
HOXB3-204ENST00000465120 FGD5Q6ZNL6 1462 aa27.7■■■□□ 2.03
HOXB3-204ENST00000465120 CUX1P39880 1505 aa27.67■■■□□ 2.02
HOXB3-204ENST00000465120 RIMBP3CA6NJZ7 1639 aa27.65■■■□□ 2.02
HOXB3-204ENST00000465120 RIMBP3BA6NNM3 1639 aa27.65■■■□□ 2.02
HOXB3-204ENST00000465120 RIMBP3Q9UFD9 1639 aa27.65■■■□□ 2.02
HOXB3-204ENST00000465120 CHD1O14646 1710 aa27.64■■■□□ 2.02
HOXB3-204ENST00000465120 ARHGEF11O15085 1522 aa27.58■■■□□ 2.01
HOXB3-204ENST00000465120 WDR97A6NE52 1622 aa27.53■■■□□ 2
HOXB3-204ENST00000465120 SNAPC4Q5SXM2 1469 aa27.53■■■□□ 2
HOXB3-204ENST00000465120 CHMP7Q8WUX9 453 aaPredicted RBP27.52■■■□□ 2
HOXB3-204ENST00000465120 CYB5RLQ6IPT4 315 aa27.49■■□□□ 1.99
HOXB3-204ENST00000465120 GRIN2BQ13224 1484 aa27.48■■□□□ 1.99
HOXB3-204ENST00000465120 MAGI1Q96QZ7 1491 aaPredicted RBP27.44■■□□□ 1.98
HOXB3-204ENST00000465120 GAPVD1Q14C86 1478 aa27.41■■□□□ 1.98
HOXB3-204ENST00000465120 ABCA10Q8WWZ4 1543 aa27.36■■□□□ 1.97
HOXB3-204ENST00000465120 SYNJ2O15056 1496 aa27.36■■□□□ 1.97
HOXB3-204ENST00000465120 PBRM1Q86U86 1689 aa27.36■■□□□ 1.97
HOXB3-204ENST00000465120 SYNJ1O43426 1573 aa27.35■■□□□ 1.97
HOXB3-204ENST00000465120 WRNQ14191 1432 aaPredicted RBP eCLIP27.34■■□□□ 1.97
HOXB3-204ENST00000465120 ARAP1Q96P48 1450 aa27.31■■□□□ 1.96
HOXB3-204ENST00000465120 ABCA5Q8WWZ7 1642 aa27.29■■□□□ 1.96
HOXB3-204ENST00000465120 CLASP1Q7Z460 1538 aa27.28■■□□□ 1.96
HOXB3-204ENST00000465120 TOP2BQ02880 1626 aa27.27■■□□□ 1.96
HOXB3-204ENST00000465120 BIVM-ERCC5R4GMW8 1640 aa27.26■■□□□ 1.95
HOXB3-204ENST00000465120 TRHP20396 242 aaPredicted RBP27.2■■□□□ 1.94
HOXB3-204ENST00000465120 GRIN2AQ12879 1464 aa27.11■■□□□ 1.93
HOXB3-204ENST00000465120 ADAMTS12P58397 1594 aa27.09■■□□□ 1.93
HOXB3-204ENST00000465120 FHAD1B1AJZ9 1412 aa27.07■■□□□ 1.92
HOXB3-204ENST00000465120 ERICH3Q5RHP9 1530 aa27.03■■□□□ 1.92
HOXB3-204ENST00000465120 CEP170Q5SW79 1584 aa26.99■■□□□ 1.91
HOXB3-204ENST00000465120 NUP160Q12769 1436 aa26.98■■□□□ 1.91
HOXB3-204ENST00000465120 ERCC6L2Q5T890 1561 aa26.91■■□□□ 1.9
HOXB3-204ENST00000465120 SHROOM2Q13796 1616 aa26.82■■□□□ 1.88
HOXB3-204ENST00000465120 JPH4Q96JJ6 628 aa26.81■■□□□ 1.88
HOXB3-204ENST00000465120 KIF27Q86VH2 1401 aa26.81■■□□□ 1.88
HOXB3-204ENST00000465120 PRG4Q92954 1404 aaPredicted RBP26.79■■□□□ 1.88
HOXB3-204ENST00000465120 IGF1RP08069 1367 aa26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms