Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CIITAP33076 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
CIITAP33076 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
CIITAP33076 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC15.5■□□□□ 0.07
CIITAP33076 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC15.5■□□□□ 0.07
CIITAP33076 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC15.5■□□□□ 0.07
CIITAP33076 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
CIITAP33076 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC15.5■□□□□ 0.07
CIITAP33076 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC15.5■□□□□ 0.07
CIITAP33076 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CIITAP33076 AC013553.1-201ENST00000560906 267 ntBASIC15.5■□□□□ 0.07
CIITAP33076 MT2A-202ENST00000561491 581 ntTSL 2 BASIC15.5■□□□□ 0.07
CIITAP33076 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC15.5■□□□□ 0.07
CIITAP33076 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC15.5■□□□□ 0.07
CIITAP33076 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CIITAP33076 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CIITAP33076 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CIITAP33076 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
CIITAP33076 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC15.5■□□□□ 0.07
CIITAP33076 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC15.5■□□□□ 0.07
CIITAP33076 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC15.49■□□□□ 0.07
CIITAP33076 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC15.49■□□□□ 0.07
CIITAP33076 RHPN1-AS1-201ENST00000518049 1918 ntBASIC15.49■□□□□ 0.07
CIITAP33076 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CIITAP33076 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC15.49■□□□□ 0.07
CIITAP33076 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC15.49■□□□□ 0.07
CIITAP33076 PSAT1P2-201ENST00000426107 972 ntBASIC15.49■□□□□ 0.07
CIITAP33076 AC103563.1-201ENST00000429316 123 ntBASIC15.49■□□□□ 0.07
CIITAP33076 KRT18P37-201ENST00000520711 1282 ntBASIC15.49■□□□□ 0.07
CIITAP33076 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC15.49■□□□□ 0.07
CIITAP33076 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
CIITAP33076 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CIITAP33076 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC15.49■□□□□ 0.07
CIITAP33076 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 KRT8P42-201ENST00000405771 1399 ntBASIC15.49■□□□□ 0.07
CIITAP33076 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CIITAP33076 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CIITAP33076 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
CIITAP33076 MCF2L-209ENST00000397036 1544 ntTSL 2 BASIC15.48■□□□□ 0.07
CIITAP33076 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CIITAP33076 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CIITAP33076 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC15.48■□□□□ 0.07
CIITAP33076 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC15.48■□□□□ 0.07
CIITAP33076 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CIITAP33076 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CIITAP33076 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CIITAP33076 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CIITAP33076 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CIITAP33076 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC15.48■□□□□ 0.07
CIITAP33076 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CIITAP33076 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC15.48■□□□□ 0.07
CIITAP33076 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
CIITAP33076 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
CIITAP33076 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC15.48■□□□□ 0.07
CIITAP33076 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CIITAP33076 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CIITAP33076 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.48■□□□□ 0.07
CIITAP33076 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC15.48■□□□□ 0.07
CIITAP33076 SNU13-204ENST00000402458 462 ntTSL 3 BASIC15.48■□□□□ 0.07
CIITAP33076 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms