Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.22e-6■■■■□ 19.5
DDX55Q8NHQ9 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.6■□□□□ 0.899e-12■■■■□ 19.5
DDX55Q8NHQ9 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.3■□□□□ 0.689e-12■■■■□ 19.5
DDX55Q8NHQ9 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC19.07■□□□□ 0.649e-12■■■■□ 19.5
DDX55Q8NHQ9 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC9.66□□□□□ -0.869e-12■■■■□ 19.5
DDX55Q8NHQ9 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC9.61□□□□□ -0.879e-12■■■■□ 19.5
DDX55Q8NHQ9 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC9.03□□□□□ -0.969e-12■■■■□ 19.5
DDX55Q8NHQ9 MAP4K4-212ENST00000456652 3855 ntTSL 5 BASIC8.85□□□□□ -0.999e-12■■■■□ 19.5
DDX55Q8NHQ9 MAP4K4-207ENST00000417294 4251 ntTSL 56.46□□□□□ -1.379e-12■■■■□ 19.5
DDX55Q8NHQ9 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.062e-15■■■■□ 19.5
DDX55Q8NHQ9 CDK2AP2-202ENST00000525402 1692 ntTSL 221.47■■□□□ 1.032e-15■■■■□ 19.5
DDX55Q8NHQ9 CDK2AP2-204ENST00000531178 923 ntTSL 1 (best)17.91■□□□□ 0.462e-15■■■■□ 19.5
DDX55Q8NHQ9 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.122e-7■■■■□ 19.4
DDX55Q8NHQ9 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC17.53■□□□□ 0.42e-7■■■■□ 19.4
DDX55Q8NHQ9 ARID4B-211ENST00000474953 3463 ntTSL 214.49□□□□□ -0.092e-7■■■■□ 19.4
DDX55Q8NHQ9 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC24.7■■□□□ 1.542e-8■■■■□ 19.4
DDX55Q8NHQ9 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.461e-7■■■■□ 19.4
DDX55Q8NHQ9 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC29.13■■■□□ 2.252e-9■■■■□ 19.4
DDX55Q8NHQ9 CENPX-203ENST00000577379 861 ntTSL 527.76■■■□□ 2.032e-9■■■■□ 19.4
DDX55Q8NHQ9 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC23.3■■□□□ 1.322e-9■■■■□ 19.4
DDX55Q8NHQ9 CENPX-209ENST00000584514 882 ntTSL 223.01■■□□□ 1.272e-9■■■■□ 19.4
DDX55Q8NHQ9 CENPX-207ENST00000583767 894 ntTSL 322.99■■□□□ 1.272e-9■■■■□ 19.4
DDX55Q8NHQ9 CENPX-205ENST00000580090 752 ntTSL 222.68■■□□□ 1.222e-9■■■■□ 19.4
DDX55Q8NHQ9 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC22.43■■□□□ 1.182e-9■■■■□ 19.4
DDX55Q8NHQ9 CENPX-204ENST00000579520 702 ntTSL 320.77■□□□□ 0.922e-9■■■■□ 19.4
DDX55Q8NHQ9 CENPX-210ENST00000584600 730 ntTSL 219.88■□□□□ 0.772e-9■■■■□ 19.4
DDX55Q8NHQ9 CENPX-208ENST00000584347 799 ntTSL 2 BASIC17.74■□□□□ 0.432e-9■■■■□ 19.4
DDX55Q8NHQ9 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.213e-7■■■■□ 19.4
DDX55Q8NHQ9 NAT14-203ENST00000588985 730 ntTSL 526.09■■□□□ 1.773e-7■■■■□ 19.4
DDX55Q8NHQ9 NAT14-202ENST00000587400 416 ntTSL 5 BASIC21.84■■□□□ 1.093e-7■■■■□ 19.4
DDX55Q8NHQ9 NAT14-205ENST00000592719 545 ntTSL 519.91■□□□□ 0.783e-7■■■■□ 19.4
DDX55Q8NHQ9 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.391e-15■■■■□ 19.4
DDX55Q8NHQ9 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC15.71■□□□□ 0.111e-15■■■■□ 19.4
DDX55Q8NHQ9 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.342e-7■■■■□ 19.3
DDX55Q8NHQ9 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.232e-7■■■■□ 19.3
DDX55Q8NHQ9 CHD4-211ENST00000544484 6554 ntTSL 2 BASIC13.77□□□□□ -0.22e-7■■■■□ 19.3
DDX55Q8NHQ9 CELSR3-201ENST00000164024 11956 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.222e-6■■■■□ 19.3
DDX55Q8NHQ9 CELSR3-204ENST00000498057 5297 ntTSL 213.16□□□□□ -0.32e-6■■■■□ 19.3
DDX55Q8NHQ9 CELSR3-202ENST00000461362 3633 ntTSL 510.73□□□□□ -0.692e-6■■■■□ 19.3
DDX55Q8NHQ9 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC24.09■■□□□ 1.453e-8■■■■□ 19.3
DDX55Q8NHQ9 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.086e-18■■■■□ 19.3
DDX55Q8NHQ9 KMT5C-203ENST00000445196 2077 ntTSL 519.44■□□□□ 0.76e-18■■■■□ 19.3
DDX55Q8NHQ9 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.57■□□□□ 0.566e-18■■■■□ 19.3
DDX55Q8NHQ9 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.471e-6■■■■□ 19.3
DDX55Q8NHQ9 RAD1-201ENST00000325577 1153 ntTSL 1 (best)17.06■□□□□ 0.321e-6■■■■□ 19.3
DDX55Q8NHQ9 RAD1-203ENST00000382038 5770 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.191e-6■■■■□ 19.3
DDX55Q8NHQ9 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.562e-14■■■■□ 19.3
DDX55Q8NHQ9 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.422e-14■■■■□ 19.3
DDX55Q8NHQ9 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.512e-9■■■■□ 19.3
DDX55Q8NHQ9 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC17.2■□□□□ 0.342e-9■■■■□ 19.3
DDX55Q8NHQ9 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.192e-9■■■■□ 19.3
DDX55Q8NHQ9 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC7.4□□□□□ -1.222e-9■■■■□ 19.3
DDX55Q8NHQ9 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC6.29□□□□□ -1.42e-9■■■■□ 19.3
DDX55Q8NHQ9 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.632e-9■■■■□ 19.3
DDX55Q8NHQ9 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.08□□□□□ -1.762e-9■■■■□ 19.3
DDX55Q8NHQ9 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.81□□□□□ -1.82e-9■■■■□ 19.3
DDX55Q8NHQ9 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.81□□□□□ -1.82e-9■■■■□ 19.3
DDX55Q8NHQ9 MBNL1-222ENST00000497971 5051 ntTSL 1 (best)1.16□□□□□ -2.222e-9■■■■□ 19.3
DDX55Q8NHQ9 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC21.49■■□□□ 1.033e-6■■■□□ 19.2
DDX55Q8NHQ9 SORBS3-201ENST00000240123 3459 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.383e-6■■■□□ 19.2
DDX55Q8NHQ9 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.53■□□□□ 0.241e-323■■■□□ 19.2
DDX55Q8NHQ9 GPC3-201ENST00000370818 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.171e-323■■■□□ 19.2
DDX55Q8NHQ9 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.051e-7■■■□□ 19.2
DDX55Q8NHQ9 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC27.52■■■□□ 21e-7■■■□□ 19.2
DDX55Q8NHQ9 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.681e-7■■■□□ 19.2
DDX55Q8NHQ9 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.11e-7■■■□□ 19.2
DDX55Q8NHQ9 TSPAN4-212ENST00000494815 2187 ntTSL 220.7■□□□□ 0.911e-7■■■□□ 19.2
DDX55Q8NHQ9 TSPAN4-210ENST00000464987 2205 ntTSL 520.01■□□□□ 0.791e-7■■■□□ 19.2
DDX55Q8NHQ9 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.771e-7■■■□□ 19.2
DDX55Q8NHQ9 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.69■□□□□ 0.741e-7■■■□□ 19.2
DDX55Q8NHQ9 TSPAN4-211ENST00000468468 2777 ntTSL 216.69■□□□□ 0.261e-7■■■□□ 19.2
DDX55Q8NHQ9 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.91■□□□□ 0.466e-12■■■□□ 19.2
DDX55Q8NHQ9 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.16e-12■■■□□ 19.2
DDX55Q8NHQ9 PTPRA-203ENST00000356147 3135 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.746e-12■■■□□ 19.2
DDX55Q8NHQ9 PTPRA-204ENST00000380393 3636 ntTSL 1 (best) BASIC10.08□□□□□ -0.86e-12■■■□□ 19.2
DDX55Q8NHQ9 PTPRA-202ENST00000318266 3219 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.86e-12■■■□□ 19.2
DDX55Q8NHQ9 SUPT5H-218ENST00000600818 718 ntTSL 216.53■□□□□ 0.241e-6■■■□□ 19.2
DDX55Q8NHQ9 SUPT5H-204ENST00000432763 3710 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.431e-6■■■□□ 19.2
DDX55Q8NHQ9 SUPT5H-201ENST00000359191 3770 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.461e-6■■■□□ 19.2
DDX55Q8NHQ9 SUPT5H-203ENST00000402194 3698 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.461e-6■■■□□ 19.2
DDX55Q8NHQ9 SUPT5H-215ENST00000599117 3902 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.51e-6■■■□□ 19.2
DDX55Q8NHQ9 SUPT5H-213ENST00000598725 3742 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.611e-6■■■□□ 19.2
DDX55Q8NHQ9 CNBP-206ENST00000502372 1026 ntTSL 513.17□□□□□ -0.33e-56■■■□□ 19.2
DDX55Q8NHQ9 HSPG2-211ENST00000486901 3586 ntTSL 212.73□□□□□ -0.378e-9■■■□□ 19.2
DDX55Q8NHQ9 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.898e-9■■■□□ 19.2
DDX55Q8NHQ9 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.012e-7■■■□□ 19.2
DDX55Q8NHQ9 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.572e-7■■■□□ 19.2
DDX55Q8NHQ9 ICAM5-203ENST00000586480 2599 ntTSL 1 (best)23.07■■□□□ 1.282e-8■■■□□ 19.2
DDX55Q8NHQ9 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.12e-8■■■□□ 19.2
DDX55Q8NHQ9 MATR3-227ENST00000618441 4018 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.311e-38■■■□□ 19.2
DDX55Q8NHQ9 MATR3-201ENST00000394805 4843 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.971e-38■■■□□ 19.2
DDX55Q8NHQ9 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC8.95□□□□□ -0.981e-38■■■□□ 19.2
DDX55Q8NHQ9 MATR3-229ENST00000361059 3970 ntAPPRIS P1 TSL 2 BASIC8.87□□□□□ -0.991e-38■■■□□ 19.2
DDX55Q8NHQ9 MATR3-232ENST00000502929 4373 ntTSL 2 BASIC8.75□□□□□ -1.011e-38■■■□□ 19.2
DDX55Q8NHQ9 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC6.08□□□□□ -1.441e-38■■■□□ 19.2
DDX55Q8NHQ9 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.42□□□□□ -1.541e-38■■■□□ 19.2
DDX55Q8NHQ9 MATR3-211ENST00000505625 7306 ntTSL 1 (best)5.37□□□□□ -1.551e-38■■■□□ 19.2
DDX55Q8NHQ9 FXYD2-207ENST00000533281 375 ntTSL 221.44■■□□□ 1.024e-10■■■□□ 19.1
DDX55Q8NHQ9 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.994e-10■■■□□ 19.1
DDX55Q8NHQ9 FXYD2-203ENST00000317594 1567 ntTSL 1 (best)18.28■□□□□ 0.524e-10■■■□□ 19.1
Retrieved 100 of 15,504 protein–RNA pairs in 115.7 ms