Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC54Q8NEL0 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC54Q8NEL0 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC54Q8NEL0 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC54Q8NEL0 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CCDC54Q8NEL0 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC54Q8NEL0 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC54Q8NEL0 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC54Q8NEL0 ESRRAP2-201ENST00000418437 1549 ntBASIC19.46■□□□□ 0.71
CCDC54Q8NEL0 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC54Q8NEL0 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC54Q8NEL0 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC54Q8NEL0 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CCDC54Q8NEL0 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC54Q8NEL0 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC54Q8NEL0 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC54Q8NEL0 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CCDC54Q8NEL0 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC54Q8NEL0 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC54Q8NEL0 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CCDC54Q8NEL0 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CCDC54Q8NEL0 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC54Q8NEL0 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
CCDC54Q8NEL0 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC54Q8NEL0 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC54Q8NEL0 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC54Q8NEL0 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC54Q8NEL0 YBX1P4-201ENST00000392794 808 ntBASIC19.45■□□□□ 0.7
CCDC54Q8NEL0 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC54Q8NEL0 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC54Q8NEL0 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC54Q8NEL0 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CCDC54Q8NEL0 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC54Q8NEL0 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC54Q8NEL0 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC54Q8NEL0 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC54Q8NEL0 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
CCDC54Q8NEL0 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC54Q8NEL0 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC54Q8NEL0 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC54Q8NEL0 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC54Q8NEL0 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC54Q8NEL0 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC54Q8NEL0 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC54Q8NEL0 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
CCDC54Q8NEL0 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC54Q8NEL0 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC54Q8NEL0 AL117328.2-201ENST00000624617 1940 ntBASIC19.43■□□□□ 0.7
CCDC54Q8NEL0 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC54Q8NEL0 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC54Q8NEL0 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC54Q8NEL0 AC137630.3-201ENST00000607245 391 ntBASIC19.43■□□□□ 0.7
CCDC54Q8NEL0 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC54Q8NEL0 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC54Q8NEL0 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC54Q8NEL0 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC54Q8NEL0 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC54Q8NEL0 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC54Q8NEL0 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC54Q8NEL0 AC079630.1-202ENST00000618127 1840 ntBASIC19.42■□□□□ 0.7
CCDC54Q8NEL0 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CCDC54Q8NEL0 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC54Q8NEL0 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC54Q8NEL0 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC54Q8NEL0 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC54Q8NEL0 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CCDC54Q8NEL0 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC54Q8NEL0 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 TK2-216ENST00000564917 1156 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 SNX5-217ENST00000606557 1087 ntBASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC54Q8NEL0 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CCDC54Q8NEL0 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CCDC54Q8NEL0 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC54Q8NEL0 C9orf163-202ENST00000624034 2573 ntBASIC19.4■□□□□ 0.7
CCDC54Q8NEL0 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC54Q8NEL0 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC54Q8NEL0 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC54Q8NEL0 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC54Q8NEL0 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC54Q8NEL0 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC54Q8NEL0 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC54Q8NEL0 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
CCDC54Q8NEL0 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC54Q8NEL0 AC233723.2-201ENST00000623798 2106 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms