RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 NISCHQ9Y2I1 1504 aa47.04■■■■■ 5.12
UPF3A-201ENST00000351487 CCDC180Q9P1Z9 1646 aa40.38■■■■■ 4.05
UPF3A-201ENST00000351487 ZCCHC6Q5VYS8 1495 aaKnown RBP39.8■■■■□ 3.96
UPF3A-201ENST00000351487 SHROOM4Q9ULL8 1493 aa39.4■■■■□ 3.9
UPF3A-201ENST00000351487 DCAF1Q9Y4B6 1507 aa38.83■■■■□ 3.81
UPF3A-201ENST00000351487 SUPT5HO00267 1087 aaKnown RBP38.5■■■■□ 3.75
UPF3A-201ENST00000351487 DCAF8L2P0C7V8 631 aa38.46■■■■□ 3.75
UPF3A-201ENST00000351487 MYO15BQ96JP2 1530 aa37.86■■■■□ 3.65
UPF3A-201ENST00000351487 ABCC9O60706 1549 aa37.53■■■■□ 3.6
UPF3A-201ENST00000351487 CHIC1Q5VXU3 224 aa37.51■■■■□ 3.6
UPF3A-201ENST00000351487 SCRIBQ14160 1630 aa37.43■■■■□ 3.58
UPF3A-201ENST00000351487 NACADO15069 1562 aa37.28■■■■□ 3.56
UPF3A-201ENST00000351487 RSF1Q96T23 1441 aaPredicted RBP37.02■■■■□ 3.52
UPF3A-201ENST00000351487 RB1CC1Q8TDY2 1594 aa36.7■■■■□ 3.47
UPF3A-201ENST00000351487 CECR2Q9BXF3 1484 aa36.52■■■■□ 3.44
UPF3A-201ENST00000351487 MROH2BQ7Z745 1585 aa36.45■■■■□ 3.43
UPF3A-201ENST00000351487 WIZO95785 1651 aa36.25■■■■□ 3.39
UPF3A-201ENST00000351487 BAZ1AQ9NRL2 1556 aaPredicted RBP36.2■■■■□ 3.39
UPF3A-201ENST00000351487 LOC105371045A0A1W2PR82 267 aa36.18■■■■□ 3.38
UPF3A-201ENST00000351487 UNC13AQ9UPW8 1703 aa36.15■■■■□ 3.38
UPF3A-201ENST00000351487 TRIM41Q8WV44 630 aa36.03■■■■□ 3.36
UPF3A-201ENST00000351487 SMARCA4P51532 1647 aa35.92■■■■□ 3.34
UPF3A-201ENST00000351487 HRCP23327 699 aa35.89■■■■□ 3.34
UPF3A-201ENST00000351487 PCGF6Q9BYE7 350 aa35.88■■■■□ 3.33
UPF3A-201ENST00000351487 EIF4G1Q04637 1599 aaKnown RBP35.86■■■■□ 3.33
UPF3A-201ENST00000351487 TOP2AP11388 1531 aaKnown RBP35.83■■■■□ 3.33
UPF3A-201ENST00000351487 BICRAQ9NZM4 1560 aa35.64■■■■□ 3.3
UPF3A-201ENST00000351487 SMARCA2P51531 1590 aa35.57■■■■□ 3.28
UPF3A-201ENST00000351487 CCDC88BA6NC98 1476 aa35.51■■■■□ 3.27
UPF3A-201ENST00000351487 FAM9AQ8IZU1 332 aaPredicted RBP35.49■■■■□ 3.27
UPF3A-201ENST00000351487 TRIM26Q12899 539 aaPredicted RBP35.49■■■■□ 3.27
UPF3A-201ENST00000351487 PEG3Q9GZU2 1588 aa35.39■■■■□ 3.26
UPF3A-201ENST00000351487 PABPN1Q86U42 306 aaKnown RBP eCLIP35.28■■■■□ 3.24
UPF3A-201ENST00000351487 ABCC8Q09428 1581 aa35.26■■■■□ 3.23
UPF3A-201ENST00000351487 EHMT2Q96KQ7 1210 aa35■■■■□ 3.19
UPF3A-201ENST00000351487 ATAD2BQ9ULI0 1458 aa34.98■■■■□ 3.19
UPF3A-201ENST00000351487 PPARGC1BQ86YN6 1023 aaKnown RBP34.92■■■■□ 3.18
UPF3A-201ENST00000351487 EEA1Q15075 1411 aa34.91■■■■□ 3.18
UPF3A-201ENST00000351487 BAZ1BQ9UIG0 1483 aaKnown RBP34.85■■■■□ 3.17
UPF3A-201ENST00000351487 SOGA1O94964 1423 aa34.83■■■■□ 3.17
UPF3A-201ENST00000351487 WRNQ14191 1432 aaPredicted RBP eCLIP34.78■■■■□ 3.16
UPF3A-201ENST00000351487 ZEB1P37275 1124 aaPredicted RBP34.68■■■■□ 3.14
UPF3A-201ENST00000351487 TNIKQ9UKE5 1360 aa34.67■■■■□ 3.14
UPF3A-201ENST00000351487 SYNJ1O43426 1573 aa34.66■■■■□ 3.14
UPF3A-201ENST00000351487 RUSC2Q8N2Y8 1516 aa34.65■■■■□ 3.14
UPF3A-201ENST00000351487 CEP162Q5TB80 1403 aa34.62■■■■□ 3.13
UPF3A-201ENST00000351487 CSRNP3Q8WYN3 585 aa34.62■■■■□ 3.13
UPF3A-201ENST00000351487 GOLGA3Q08378 1498 aa34.54■■■■□ 3.12
UPF3A-201ENST00000351487 HMGXB3Q12766 1538 aa34.49■■■■□ 3.11
UPF3A-201ENST00000351487 KIF21BO75037 1637 aa34.46■■■■□ 3.11
UPF3A-201ENST00000351487 NCAPD3P42695 1498 aa34.42■■■■□ 3.1
UPF3A-201ENST00000351487 CEP164Q9UPV0 1460 aa34.39■■■■□ 3.1
UPF3A-201ENST00000351487 TOP2BQ02880 1626 aa34.36■■■■□ 3.09
UPF3A-201ENST00000351487 BIVM-ERCC5R4GMW8 1640 aa34.31■■■■□ 3.08
UPF3A-201ENST00000351487 UBTFP17480 764 aaKnown RBP34.31■■■■□ 3.08
UPF3A-201ENST00000351487 RAPGEF2Q9Y4G8 1499 aa34.06■■■■□ 3.04
UPF3A-201ENST00000351487 CFTRP13569 1480 aa34.04■■■■□ 3.04
UPF3A-201ENST00000351487 CLIP1P30622 1438 aa34.04■■■■□ 3.04
UPF3A-201ENST00000351487 PRDM2Q13029 1718 aa33.99■■■■□ 3.03
UPF3A-201ENST00000351487 CUX1P39880 1505 aa33.99■■■■□ 3.03
UPF3A-201ENST00000351487 ERICH3Q5RHP9 1530 aa33.97■■■■□ 3.03
UPF3A-201ENST00000351487 VPS8Q8N3P4 1428 aa33.93■■■■□ 3.02
UPF3A-201ENST00000351487 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.92■■■■□ 3.02
UPF3A-201ENST00000351487 PRXQ9BXM0 1461 aa33.9■■■■□ 3.02
UPF3A-201ENST00000351487 CCER1Q8TC90 406 aaPredicted RBP33.88■■■■□ 3.01
UPF3A-201ENST00000351487 TTBK1Q5TCY1 1321 aaPredicted RBP33.87■■■■□ 3.01
UPF3A-201ENST00000351487 KIF27Q86VH2 1401 aa33.76■■■□□ 2.99
UPF3A-201ENST00000351487 CADPSQ9ULU8 1353 aa33.64■■■□□ 2.98
UPF3A-201ENST00000351487 CC2D2AQ9P2K1 1620 aa33.62■■■□□ 2.97
UPF3A-201ENST00000351487 ARAP1Q96P48 1450 aa33.58■■■□□ 2.97
UPF3A-201ENST00000351487 APLP2Q06481 763 aa33.55■■■□□ 2.96
UPF3A-201ENST00000351487 RANGAP1P46060 587 aaPredicted RBP33.44■■■□□ 2.94
UPF3A-201ENST00000351487 CUX2O14529 1486 aa33.42■■■□□ 2.94
UPF3A-201ENST00000351487 FGD5Q6ZNL6 1462 aa33.4■■■□□ 2.94
UPF3A-201ENST00000351487 IGF1RP08069 1367 aa33.35■■■□□ 2.93
UPF3A-201ENST00000351487 ARHGAP35Q9NRY4 1499 aa33.33■■■□□ 2.93
UPF3A-201ENST00000351487 FANCD2Q9BXW9 1451 aa33.31■■■□□ 2.92
UPF3A-201ENST00000351487 HNRNPUL2Q1KMD3 747 aaKnown RBP33.3■■■□□ 2.92
UPF3A-201ENST00000351487 DNMBPQ6XZF7 1577 aa33.24■■■□□ 2.91
UPF3A-201ENST00000351487 CARMIL1Q5VZK9 1371 aa33.19■■■□□ 2.9
UPF3A-201ENST00000351487 KANK4Q5T7N3 995 aaPredicted RBP33.14■■■□□ 2.9
UPF3A-201ENST00000351487 RRBP1Q9P2E9 1410 aaKnown RBP33.14■■■□□ 2.9
UPF3A-201ENST00000351487 ABCA10Q8WWZ4 1543 aa33.11■■■□□ 2.89
UPF3A-201ENST00000351487 TOPBP1Q92547 1522 aa33.11■■■□□ 2.89
UPF3A-201ENST00000351487 DIEXFQ68CQ4 756 aaKnown RBP33.09■■■□□ 2.89
UPF3A-201ENST00000351487 MAP3K1Q13233 1512 aa33.08■■■□□ 2.89
UPF3A-201ENST00000351487 POLA1P09884 1462 aaPredicted RBP33.05■■■□□ 2.88
UPF3A-201ENST00000351487 LAMC3Q9Y6N6 1575 aa33.05■■■□□ 2.88
UPF3A-201ENST00000351487 NESP48681 1621 aa33.03■■■□□ 2.88
UPF3A-201ENST00000351487 TIAM1Q13009 1591 aa33■■■□□ 2.87
UPF3A-201ENST00000351487 ZNF316A6NFI3 1004 aaPredicted RBP33■■■□□ 2.87
UPF3A-201ENST00000351487 RAD54L2Q9Y4B4 1467 aa32.98■■■□□ 2.87
UPF3A-201ENST00000351487 CUL7Q14999 1698 aa32.98■■■□□ 2.87
UPF3A-201ENST00000351487 CLSPNQ9HAW4 1339 aa32.97■■■□□ 2.87
UPF3A-201ENST00000351487 WDR97A6NE52 1622 aa32.94■■■□□ 2.86
UPF3A-201ENST00000351487 CCNB3Q8WWL7 1395 aa32.91■■■□□ 2.86
UPF3A-201ENST00000351487 FHAD1B1AJZ9 1412 aa32.89■■■□□ 2.86
UPF3A-201ENST00000351487 DHX57Q6P158 1386 aaKnown RBP32.89■■■□□ 2.86
UPF3A-201ENST00000351487 CFAP43Q8NDM7 1665 aa32.87■■■□□ 2.85
UPF3A-201ENST00000351487 URB2Q14146 1524 aaKnown RBP32.86■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms