Protein–RNA interactions for Protein: Q86VN1

VPS36, Vacuolar protein-sorting-associated protein 36, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36Q86VN1 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
VPS36Q86VN1 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
VPS36Q86VN1 YBX1P4-201ENST00000392794 808 ntBASIC24.06■■□□□ 1.44
VPS36Q86VN1 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
VPS36Q86VN1 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
VPS36Q86VN1 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC24.06■■□□□ 1.44
VPS36Q86VN1 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
VPS36Q86VN1 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
VPS36Q86VN1 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
VPS36Q86VN1 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC24.05■■□□□ 1.44
VPS36Q86VN1 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
VPS36Q86VN1 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
VPS36Q86VN1 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
VPS36Q86VN1 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC24.05■■□□□ 1.44
VPS36Q86VN1 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
VPS36Q86VN1 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
VPS36Q86VN1 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
VPS36Q86VN1 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
VPS36Q86VN1 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
VPS36Q86VN1 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
VPS36Q86VN1 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
VPS36Q86VN1 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC24.04■■□□□ 1.44
VPS36Q86VN1 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC24.04■■□□□ 1.44
VPS36Q86VN1 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC24.04■■□□□ 1.44
VPS36Q86VN1 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
VPS36Q86VN1 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
VPS36Q86VN1 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
VPS36Q86VN1 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
VPS36Q86VN1 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
VPS36Q86VN1 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
VPS36Q86VN1 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
VPS36Q86VN1 GCA-201ENST00000233612 1694 ntTSL 2 BASIC24.03■■□□□ 1.44
VPS36Q86VN1 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
VPS36Q86VN1 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
VPS36Q86VN1 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
VPS36Q86VN1 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
VPS36Q86VN1 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC24.03■■□□□ 1.44
VPS36Q86VN1 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
VPS36Q86VN1 USF2-207ENST00000595068 1612 ntTSL 5 BASIC24.02■■□□□ 1.44
VPS36Q86VN1 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
VPS36Q86VN1 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC24.02■■□□□ 1.44
VPS36Q86VN1 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
VPS36Q86VN1 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC24.02■■□□□ 1.44
VPS36Q86VN1 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
VPS36Q86VN1 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
VPS36Q86VN1 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
VPS36Q86VN1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
VPS36Q86VN1 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
VPS36Q86VN1 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
VPS36Q86VN1 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
VPS36Q86VN1 REST-206ENST00000612429 1376 ntTSL 5 BASIC24.01■■□□□ 1.43
VPS36Q86VN1 REST-207ENST00000616975 1370 ntTSL 5 BASIC24.01■■□□□ 1.43
VPS36Q86VN1 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
VPS36Q86VN1 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
VPS36Q86VN1 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
VPS36Q86VN1 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC24.01■■□□□ 1.43
VPS36Q86VN1 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
VPS36Q86VN1 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC24■■□□□ 1.43
VPS36Q86VN1 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
VPS36Q86VN1 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
VPS36Q86VN1 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
VPS36Q86VN1 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS36Q86VN1 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC23.99■■□□□ 1.43
VPS36Q86VN1 AC103834.1-201ENST00000520383 144 ntBASIC23.99■■□□□ 1.43
VPS36Q86VN1 SNX5-217ENST00000606557 1087 ntBASIC23.99■■□□□ 1.43
VPS36Q86VN1 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC23.99■■□□□ 1.43
VPS36Q86VN1 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC23.99■■□□□ 1.43
VPS36Q86VN1 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS36Q86VN1 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS36Q86VN1 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS36Q86VN1 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS36Q86VN1 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS36Q86VN1 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS36Q86VN1 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS36Q86VN1 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS36Q86VN1 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.98■■□□□ 1.43
VPS36Q86VN1 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS36Q86VN1 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS36Q86VN1 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
VPS36Q86VN1 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS36Q86VN1 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS36Q86VN1 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS36Q86VN1 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS36Q86VN1 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS36Q86VN1 ESRRAP2-201ENST00000418437 1549 ntBASIC23.97■■□□□ 1.43
VPS36Q86VN1 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.97■■□□□ 1.43
VPS36Q86VN1 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC23.97■■□□□ 1.43
VPS36Q86VN1 GUSBP5-202ENST00000510805 1989 ntBASIC23.97■■□□□ 1.43
VPS36Q86VN1 AC103724.3-201ENST00000564481 992 ntBASIC23.97■■□□□ 1.43
VPS36Q86VN1 TK2-216ENST00000564917 1156 ntTSL 3 BASIC23.97■■□□□ 1.43
VPS36Q86VN1 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC23.97■■□□□ 1.43
VPS36Q86VN1 AL353803.4-201ENST00000565882 1934 ntBASIC23.97■■□□□ 1.43
VPS36Q86VN1 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VPS36Q86VN1 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC23.97■■□□□ 1.43
VPS36Q86VN1 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
VPS36Q86VN1 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC23.96■■□□□ 1.43
VPS36Q86VN1 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
VPS36Q86VN1 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC23.96■■□□□ 1.43
VPS36Q86VN1 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
VPS36Q86VN1 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms