Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 DBN1-206ENST00000472831 2667 ntTSL 217.07■□□□□ 0.325e-6■■■■□ 20.6
YBX3P16989 DBN1-204ENST00000467054 793 ntTSL 216.91■□□□□ 0.35e-6■■■■□ 20.6
YBX3P16989 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.195e-6■■■■□ 20.6
YBX3P16989 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.095e-6■■■■□ 20.6
YBX3P16989 TMEM256-PLSCR3-203ENST00000571125 951 ntAPPRIS ALT2 TSL 525.66■■□□□ 1.78e-10■■■■□ 20.6
YBX3P16989 TMEM256-PLSCR3-202ENST00000570600 1526 ntAPPRIS ALT2 TSL 225.01■■□□□ 1.598e-10■■■■□ 20.6
YBX3P16989 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC24.27■■□□□ 1.488e-10■■■■□ 20.6
YBX3P16989 TMEM256-PLSCR3-201ENST00000570569 562 ntAPPRIS P5 TSL 322.55■■□□□ 1.28e-10■■■■□ 20.6
YBX3P16989 SREBF2-205ENST00000463741 634 ntTSL 221.11■□□□□ 0.973e-7■■■■□ 20.6
YBX3P16989 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.798e-10■■■■□ 20.6
YBX3P16989 TMEM256-202ENST00000575427 403 ntTSL 216.78■□□□□ 0.288e-10■■■■□ 20.6
YBX3P16989 TMEM256-203ENST00000576017 511 ntTSL 311.07□□□□□ -0.648e-10■■■■□ 20.6
YBX3P16989 NELFE-205ENST00000441998 1075 ntAPPRIS ALT2 TSL 514.83□□□□□ -0.042e-7■■■■□ 20.6
YBX3P16989 IGF2BP1-202ENST00000431824 1317 ntTSL 1 (best) BASIC15.95■□□□□ 0.143e-7■■■■□ 20.6
YBX3P16989 ATF7IP2-209ENST00000562396 1681 nt27.42■■□□□ 1.981e-9■■■■□ 20.6
YBX3P16989 ATF7IP2-216ENST00000569900 559 ntTSL 421.58■■□□□ 1.051e-9■■■■□ 20.6
YBX3P16989 ATF7IP2-207ENST00000561932 538 ntTSL 420.55■□□□□ 0.881e-9■■■■□ 20.6
YBX3P16989 ATF7IP2-205ENST00000535850 1907 ntTSL 213.41□□□□□ -0.261e-9■■■■□ 20.6
YBX3P16989 ATF7IP2-217ENST00000569939 564 ntTSL 412.69□□□□□ -0.381e-9■■■■□ 20.6
YBX3P16989 ATF7IP2-210ENST00000562527 625 ntTSL 312.62□□□□□ -0.391e-9■■■■□ 20.6
YBX3P16989 ATF7IP2-208ENST00000562102 558 ntTSL 49.43□□□□□ -0.91e-9■■■■□ 20.6
YBX3P16989 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC8.6□□□□□ -1.031e-9■■■■□ 20.6
YBX3P16989 ATF7IP2-218ENST00000570163 559 ntTSL 27.42□□□□□ -1.221e-9■■■■□ 20.6
YBX3P16989 ATF7IP2-214ENST00000566316 576 ntTSL 26.38□□□□□ -1.391e-9■■■■□ 20.6
YBX3P16989 ATF7IP2-211ENST00000564797 450 ntTSL 36.09□□□□□ -1.431e-9■■■■□ 20.6
YBX3P16989 C18orf8-204ENST00000589215 1945 ntTSL 222.75■■□□□ 1.233e-6■■■■□ 20.6
YBX3P16989 C18orf8-209ENST00000590870 2102 ntTSL 522.74■■□□□ 1.233e-6■■■■□ 20.6
YBX3P16989 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC22.18■■□□□ 1.143e-6■■■■□ 20.6
YBX3P16989 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.38■□□□□ 0.693e-6■■■■□ 20.6
YBX3P16989 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.443e-6■■■■□ 20.6
YBX3P16989 NAA10-214ENST00000482485 1075 ntTSL 220.64■□□□□ 0.893e-7■■■■□ 20.5
YBX3P16989 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.387e-7■■■■□ 20.5
YBX3P16989 PPP1CA-210ENST00000542876 588 ntTSL 323.87■■□□□ 1.411e-8■■■■□ 20.5
YBX3P16989 PPP1CA-211ENST00000546202 554 ntTSL 420.27■□□□□ 0.841e-8■■■■□ 20.5
YBX3P16989 CKLF-207ENST00000534692 546 ntTSL 329.5■■■□□ 2.311e-7■■■■□ 20.5
YBX3P16989 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC28.44■■■□□ 2.141e-7■■■■□ 20.5
YBX3P16989 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC27.04■■□□□ 1.921e-7■■■■□ 20.5
YBX3P16989 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC26.07■■□□□ 1.761e-7■■■■□ 20.5
YBX3P16989 CKLF-CMTM1-202ENST00000527845 504 ntTSL 323.91■■□□□ 1.421e-7■■■■□ 20.5
YBX3P16989 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.391e-7■■■■□ 20.5
YBX3P16989 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.21e-7■■■■□ 20.5
YBX3P16989 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.111e-7■■■■□ 20.5
YBX3P16989 CKLF-CMTM1-205ENST00000615332 395 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.041e-7■■■■□ 20.5
YBX3P16989 CKLF-CMTM1-201ENST00000527729 585 ntAPPRIS P3 TSL 2 BASIC13.06□□□□□ -0.321e-7■■■■□ 20.5
YBX3P16989 CKLF-208ENST00000563092 365 ntTSL 311.96□□□□□ -0.491e-7■■■■□ 20.5
YBX3P16989 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC8.35□□□□□ -1.071e-7■■■■□ 20.5
YBX3P16989 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC21.4■■□□□ 1.022e-10■■■■□ 20.5
YBX3P16989 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC17.38■□□□□ 0.372e-10■■■■□ 20.5
YBX3P16989 DHTKD1-203ENST00000437298 933 ntTSL 321.32■■□□□ 12e-6■■■■□ 20.5
YBX3P16989 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.12e-6■■■■□ 20.5
YBX3P16989 DHTKD1-205ENST00000465617 773 ntTSL 311.12□□□□□ -0.632e-6■■■■□ 20.5
YBX3P16989 CDC73-203ENST00000482484 764 ntTSL 511.3□□□□□ -0.63e-6■■■■□ 20.5
YBX3P16989 CPD-203ENST00000579502 672 ntTSL 57.02□□□□□ -1.292e-6■■■■□ 20.5
YBX3P16989 CPD-209ENST00000584221 680 ntTSL 36.97□□□□□ -1.292e-6■■■■□ 20.5
YBX3P16989 ANKRD27-206ENST00000588700 773 ntTSL 522.84■■□□□ 1.251e-6■■■■□ 20.5
YBX3P16989 ANKRD27-202ENST00000586463 743 ntTSL 522.3■■□□□ 1.161e-6■■■■□ 20.5
YBX3P16989 ANKRD27-209ENST00000593232 558 ntTSL 212.81□□□□□ -0.361e-6■■■■□ 20.5
YBX3P16989 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC27.65■■■□□ 2.023e-12■■■■□ 20.5
YBX3P16989 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC25.81■■□□□ 1.723e-12■■■■□ 20.5
YBX3P16989 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.654e-6■■■■□ 20.5
YBX3P16989 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.274e-7■■■■□ 20.5
YBX3P16989 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.164e-7■■■■□ 20.5
YBX3P16989 PLCG1-211ENST00000490253 527 ntTSL 223.76■■□□□ 1.393e-12■■■■□ 20.5
YBX3P16989 PLCG1-210ENST00000483646 591 ntTSL 313.2□□□□□ -0.33e-12■■■■□ 20.5
YBX3P16989 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.283e-9■■■■□ 20.5
YBX3P16989 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.89■□□□□ 0.933e-9■■■■□ 20.5
YBX3P16989 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC19.97■□□□□ 0.793e-9■■■■□ 20.5
YBX3P16989 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC19.27■□□□□ 0.683e-9■■■■□ 20.5
YBX3P16989 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.62□□□□□ -0.077e-7■■■■□ 20.4
YBX3P16989 AC020978.8-201ENST00000571975 3022 ntBASIC8.01□□□□□ -1.134e-8■■■■□ 20.4
YBX3P16989 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.237e-7■■■■□ 20.4
YBX3P16989 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC6.87□□□□□ -1.317e-7■■■■□ 20.4
YBX3P16989 COPS3-213ENST00000577210 752 ntTSL 33.83□□□□□ -1.85e-7■■■■□ 20.4
YBX3P16989 RPN1-206ENST00000495462 566 ntTSL 38.9□□□□□ -0.981e-10■■■■□ 20.4
YBX3P16989 MRPL48-214ENST00000544819 742 ntTSL 217.86■□□□□ 0.452e-7■■■■□ 20.4
YBX3P16989 MRPL48-213ENST00000544140 996 ntTSL 216.79■□□□□ 0.282e-7■■■■□ 20.4
YBX3P16989 VPS51-214ENST00000534124 1089 ntTSL 528.84■■■□□ 2.217e-7■■■■□ 20.4
YBX3P16989 VPS51-202ENST00000526578 534 ntTSL 228.8■■■□□ 2.27e-7■■■■□ 20.4
YBX3P16989 VPS51-207ENST00000529180 1027 ntAPPRIS ALT2 TSL 328.45■■■□□ 2.147e-7■■■■□ 20.4
YBX3P16989 VPS51-211ENST00000533487 600 ntTSL 326.63■■□□□ 1.857e-7■■■■□ 20.4
YBX3P16989 VPS51-215ENST00000534557 854 ntAPPRIS ALT2 TSL 324.65■■□□□ 1.547e-7■■■■□ 20.4
YBX3P16989 VPS51-209ENST00000530773 837 ntTSL 524.65■■□□□ 1.547e-7■■■■□ 20.4
YBX3P16989 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.487e-7■■■■□ 20.4
YBX3P16989 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC31.75■■■□□ 2.673e-7■■■■□ 20.4
YBX3P16989 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC29.16■■■□□ 2.263e-7■■■■□ 20.4
YBX3P16989 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC24.89■■□□□ 1.583e-7■■■■□ 20.4
YBX3P16989 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC22.77■■□□□ 1.243e-7■■■■□ 20.4
YBX3P16989 C17orf49-205ENST00000547747 430 ntTSL 319.93■□□□□ 0.783e-7■■■■□ 20.4
YBX3P16989 C17orf49-206ENST00000549857 2343 ntTSL 219.63■□□□□ 0.733e-7■■■■□ 20.4
YBX3P16989 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC18.99■□□□□ 0.633e-7■■■■□ 20.4
YBX3P16989 C17orf49-207ENST00000550038 363 ntTSL 313.69□□□□□ -0.223e-7■■■■□ 20.4
YBX3P16989 ANKHD1-220ENST00000511151 1216 ntTSL 329.01■■■□□ 2.231e-18■■■■□ 20.4
YBX3P16989 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC24.13■■□□□ 1.451e-18■■■■□ 20.4
YBX3P16989 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC24■■□□□ 1.431e-18■■■■□ 20.4
YBX3P16989 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC23.96■■□□□ 1.431e-18■■■■□ 20.4
YBX3P16989 AGO1-203ENST00000635259 2836 ntTSL 513.19□□□□□ -0.35e-9■■■■□ 20.4
YBX3P16989 RPLP0-220ENST00000551217 677 nt13.08□□□□□ -0.321e-37■■■■□ 20.4
YBX3P16989 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.138e-7■■■■□ 20.4
YBX3P16989 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.088e-7■■■■□ 20.4
YBX3P16989 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.461e-6■■■■□ 20.4
Retrieved 100 of 29,075 protein–RNA pairs in 740.6 ms