RNA–Protein interactions for RNA: ENST00000379440.8

PRNP-201, Transcript of prion protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRNP, Length 2,657 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRNP-201ENST00000379440 NISCHQ9Y2I1 1504 aa32.15■■■□□ 2.74
PRNP-201ENST00000379440 CCDC180Q9P1Z9 1646 aa27.59■■■□□ 2.01
PRNP-201ENST00000379440 ZCCHC6Q5VYS8 1495 aaKnown RBP27.09■■□□□ 1.93
PRNP-201ENST00000379440 SHROOM4Q9ULL8 1493 aa26.97■■□□□ 1.91
PRNP-201ENST00000379440 DCAF8L2P0C7V8 631 aa26.74■■□□□ 1.87
PRNP-201ENST00000379440 DCAF1Q9Y4B6 1507 aa26.41■■□□□ 1.82
PRNP-201ENST00000379440 SUPT5HO00267 1087 aaKnown RBP26.22■■□□□ 1.79
PRNP-201ENST00000379440 ABCC9O60706 1549 aa25.95■■□□□ 1.74
PRNP-201ENST00000379440 MYO15BQ96JP2 1530 aa25.85■■□□□ 1.73
PRNP-201ENST00000379440 SCRIBQ14160 1630 aa25.73■■□□□ 1.71
PRNP-201ENST00000379440 NACADO15069 1562 aa25.63■■□□□ 1.69
PRNP-201ENST00000379440 RB1CC1Q8TDY2 1594 aa25.32■■□□□ 1.64
PRNP-201ENST00000379440 CHIC1Q5VXU3 224 aa25.27■■□□□ 1.64
PRNP-201ENST00000379440 RSF1Q96T23 1441 aaPredicted RBP25.23■■□□□ 1.63
PRNP-201ENST00000379440 CECR2Q9BXF3 1484 aa25.1■■□□□ 1.61
PRNP-201ENST00000379440 MROH2BQ7Z745 1585 aa24.96■■□□□ 1.59
PRNP-201ENST00000379440 UNC13AQ9UPW8 1703 aa24.91■■□□□ 1.58
PRNP-201ENST00000379440 WIZO95785 1651 aa24.79■■□□□ 1.56
PRNP-201ENST00000379440 BAZ1AQ9NRL2 1556 aaPredicted RBP24.73■■□□□ 1.55
PRNP-201ENST00000379440 PABPN1Q86U42 306 aaKnown RBP eCLIP24.7■■□□□ 1.55
PRNP-201ENST00000379440 BICRAQ9NZM4 1560 aa24.64■■□□□ 1.54
PRNP-201ENST00000379440 SMARCA4P51532 1647 aa24.59■■□□□ 1.53
PRNP-201ENST00000379440 LOC105371045A0A1W2PR82 267 aa24.48■■□□□ 1.51
PRNP-201ENST00000379440 TRIM41Q8WV44 630 aa24.48■■□□□ 1.51
PRNP-201ENST00000379440 TOP2AP11388 1531 aaKnown RBP24.41■■□□□ 1.5
PRNP-201ENST00000379440 CCDC88BA6NC98 1476 aa24.29■■□□□ 1.48
PRNP-201ENST00000379440 SMARCA2P51531 1590 aa24.26■■□□□ 1.47
PRNP-201ENST00000379440 EIF4G1Q04637 1599 aaKnown RBP24.24■■□□□ 1.47
PRNP-201ENST00000379440 FAM9AQ8IZU1 332 aaPredicted RBP24.23■■□□□ 1.47
PRNP-201ENST00000379440 PEG3Q9GZU2 1588 aa24.16■■□□□ 1.46
PRNP-201ENST00000379440 ATAD2BQ9ULI0 1458 aa24.09■■□□□ 1.45
PRNP-201ENST00000379440 ABCC8Q09428 1581 aa24.04■■□□□ 1.44
PRNP-201ENST00000379440 EHMT2Q96KQ7 1210 aa24.01■■□□□ 1.43
PRNP-201ENST00000379440 BAZ1BQ9UIG0 1483 aaKnown RBP23.98■■□□□ 1.43
PRNP-201ENST00000379440 PCGF6Q9BYE7 350 aa23.92■■□□□ 1.42
PRNP-201ENST00000379440 PELP1Q8IZL8 1130 aaKnown RBP23.77■■□□□ 1.39
PRNP-201ENST00000379440 NCAPD3P42695 1498 aa23.72■■□□□ 1.39
PRNP-201ENST00000379440 SOGA1O94964 1423 aa23.72■■□□□ 1.39
PRNP-201ENST00000379440 WRNQ14191 1432 aaPredicted RBP eCLIP23.72■■□□□ 1.39
PRNP-201ENST00000379440 HMGXB3Q12766 1538 aa23.67■■□□□ 1.38
PRNP-201ENST00000379440 RUSC2Q8N2Y8 1516 aa23.63■■□□□ 1.37
PRNP-201ENST00000379440 SYNJ1O43426 1573 aa23.62■■□□□ 1.37
PRNP-201ENST00000379440 TRIM26Q12899 539 aaPredicted RBP23.61■■□□□ 1.37
PRNP-201ENST00000379440 HRCP23327 699 aa23.56■■□□□ 1.36
PRNP-201ENST00000379440 CSRNP3Q8WYN3 585 aa23.56■■□□□ 1.36
PRNP-201ENST00000379440 EEA1Q15075 1411 aa23.53■■□□□ 1.36
PRNP-201ENST00000379440 UBTFP17480 764 aaKnown RBP23.39■■□□□ 1.33
PRNP-201ENST00000379440 PPARGC1BQ86YN6 1023 aaKnown RBP23.39■■□□□ 1.33
PRNP-201ENST00000379440 CC2D2AQ9P2K1 1620 aa23.38■■□□□ 1.33
PRNP-201ENST00000379440 TOP2BQ02880 1626 aa23.38■■□□□ 1.33
PRNP-201ENST00000379440 TNIKQ9UKE5 1360 aa23.38■■□□□ 1.33
PRNP-201ENST00000379440 CFTRP13569 1480 aa23.38■■□□□ 1.33
PRNP-201ENST00000379440 CEP162Q5TB80 1403 aa23.36■■□□□ 1.33
PRNP-201ENST00000379440 GOLGA3Q08378 1498 aa23.33■■□□□ 1.32
PRNP-201ENST00000379440 MYT1Q01538 1121 aa23.31■■□□□ 1.32
PRNP-201ENST00000379440 BIVM-ERCC5R4GMW8 1640 aa23.31■■□□□ 1.32
PRNP-201ENST00000379440 CUX1P39880 1505 aa23.27■■□□□ 1.32
PRNP-201ENST00000379440 CEP164Q9UPV0 1460 aa23.25■■□□□ 1.31
PRNP-201ENST00000379440 KIF21BO75037 1637 aa23.23■■□□□ 1.31
PRNP-201ENST00000379440 CADPSQ9ULU8 1353 aa23.22■■□□□ 1.31
PRNP-201ENST00000379440 RAPGEF2Q9Y4G8 1499 aa23.17■■□□□ 1.3
PRNP-201ENST00000379440 PRDM2Q13029 1718 aa23.15■■□□□ 1.3
PRNP-201ENST00000379440 TTBK1Q5TCY1 1321 aaPredicted RBP23.1■■□□□ 1.29
PRNP-201ENST00000379440 CLIP1P30622 1438 aa23.04■■□□□ 1.28
PRNP-201ENST00000379440 RANGAP1P46060 587 aaPredicted RBP23.04■■□□□ 1.28
PRNP-201ENST00000379440 KIF27Q86VH2 1401 aa23.03■■□□□ 1.28
PRNP-201ENST00000379440 PRXQ9BXM0 1461 aa23.02■■□□□ 1.28
PRNP-201ENST00000379440 FANCD2Q9BXW9 1451 aa22.98■■□□□ 1.27
PRNP-201ENST00000379440 NESP48681 1621 aa22.97■■□□□ 1.27
PRNP-201ENST00000379440 ERICH3Q5RHP9 1530 aa22.95■■□□□ 1.27
PRNP-201ENST00000379440 FGD5Q6ZNL6 1462 aa22.93■■□□□ 1.26
PRNP-201ENST00000379440 DNAJC5BQ9UF47 199 aa22.93■■□□□ 1.26
PRNP-201ENST00000379440 CUX2O14529 1486 aa22.92■■□□□ 1.26
PRNP-201ENST00000379440 VPS8Q8N3P4 1428 aa22.88■■□□□ 1.25
PRNP-201ENST00000379440 ZEB1P37275 1124 aaPredicted RBP22.85■■□□□ 1.25
PRNP-201ENST00000379440 IGF1RP08069 1367 aa22.84■■□□□ 1.25
PRNP-201ENST00000379440 DNMBPQ6XZF7 1577 aa22.79■■□□□ 1.24
PRNP-201ENST00000379440 TOPBP1Q92547 1522 aa22.78■■□□□ 1.24
PRNP-201ENST00000379440 LAMC3Q9Y6N6 1575 aa22.78■■□□□ 1.24
PRNP-201ENST00000379440 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.77■■□□□ 1.24
PRNP-201ENST00000379440 RAD54L2Q9Y4B4 1467 aa22.76■■□□□ 1.23
PRNP-201ENST00000379440 APLP2Q06481 763 aa22.74■■□□□ 1.23
PRNP-201ENST00000379440 ARAP1Q96P48 1450 aa22.74■■□□□ 1.23
PRNP-201ENST00000379440 POLA1P09884 1462 aaPredicted RBP22.73■■□□□ 1.23
PRNP-201ENST00000379440 CARMIL1Q5VZK9 1371 aa22.73■■□□□ 1.23
PRNP-201ENST00000379440 URB2Q14146 1524 aaKnown RBP22.68■■□□□ 1.22
PRNP-201ENST00000379440 CCER1Q8TC90 406 aaPredicted RBP22.66■■□□□ 1.22
PRNP-201ENST00000379440 ABCA10Q8WWZ4 1543 aa22.66■■□□□ 1.22
PRNP-201ENST00000379440 PDS5BQ9NTI5 1447 aa22.65■■□□□ 1.22
PRNP-201ENST00000379440 ARHGAP35Q9NRY4 1499 aa22.64■■□□□ 1.21
PRNP-201ENST00000379440 KIF21AQ7Z4S6 1674 aa22.57■■□□□ 1.2
PRNP-201ENST00000379440 KANK4Q5T7N3 995 aaPredicted RBP22.55■■□□□ 1.2
PRNP-201ENST00000379440 HNRNPUL2Q1KMD3 747 aaKnown RBP22.54■■□□□ 1.2
PRNP-201ENST00000379440 TDRD9Q8NDG6 1382 aaKnown RBP22.52■■□□□ 1.2
PRNP-201ENST00000379440 WDR97A6NE52 1622 aa22.49■■□□□ 1.19
PRNP-201ENST00000379440 CUL7Q14999 1698 aa22.44■■□□□ 1.18
PRNP-201ENST00000379440 P3H3Q8IVL6 736 aa22.44■■□□□ 1.18
PRNP-201ENST00000379440 GAPVD1Q14C86 1478 aa22.42■■□□□ 1.18
PRNP-201ENST00000379440 ABCA5Q8WWZ7 1642 aa22.42■■□□□ 1.18
PRNP-201ENST00000379440 TARBP1Q13395 1621 aaKnown RBP22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 432.8 ms