RNA–Protein interactions for RNA: ENST00000534692.1

CKLF-207, Transcript of chemokine like factor, humanhuman

TSL 3

Gene CKLF, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKLF-207ENST00000534692 NISCHQ9Y2I1 1504 aa55.73■■■■■ 6.51
CKLF-207ENST00000534692 CCDC180Q9P1Z9 1646 aa49.61■■■■■ 5.53
CKLF-207ENST00000534692 ABCC9O60706 1549 aa48.32■■■■■ 5.33
CKLF-207ENST00000534692 RB1CC1Q8TDY2 1594 aa46.6■■■■■ 5.05
CKLF-207ENST00000534692 NACADO15069 1562 aa46.57■■■■■ 5.05
CKLF-207ENST00000534692 ZCCHC6Q5VYS8 1495 aaKnown RBP46.46■■■■■ 5.03
CKLF-207ENST00000534692 MYO15BQ96JP2 1530 aa46.36■■■■■ 5.01
CKLF-207ENST00000534692 DCAF8L2P0C7V8 631 aa46.33■■■■■ 5.01
CKLF-207ENST00000534692 DCAF1Q9Y4B6 1507 aa46.18■■■■■ 4.98
CKLF-207ENST00000534692 UNC13AQ9UPW8 1703 aa45.63■■■■■ 4.89
CKLF-207ENST00000534692 BICRAQ9NZM4 1560 aa45.21■■■■■ 4.83
CKLF-207ENST00000534692 SCRIBQ14160 1630 aa45.17■■■■■ 4.82
CKLF-207ENST00000534692 PABPN1Q86U42 306 aaKnown RBP eCLIP45.11■■■■■ 4.81
CKLF-207ENST00000534692 SHROOM4Q9ULL8 1493 aa44.77■■■■■ 4.76
CKLF-207ENST00000534692 DNAJC5BQ9UF47 199 aa44.27■■■■■ 4.68
CKLF-207ENST00000534692 EIF4G1Q04637 1599 aaKnown RBP43.98■■■■■ 4.63
CKLF-207ENST00000534692 CC2D2AQ9P2K1 1620 aa43.78■■■■■ 4.6
CKLF-207ENST00000534692 CECR2Q9BXF3 1484 aa43.44■■■■■ 4.54
CKLF-207ENST00000534692 SMARCA4P51532 1647 aa43.26■■■■■ 4.52
CKLF-207ENST00000534692 BAZ1AQ9NRL2 1556 aaPredicted RBP43.2■■■■■ 4.51
CKLF-207ENST00000534692 ATAD2BQ9ULI0 1458 aa42.97■■■■■ 4.47
CKLF-207ENST00000534692 NCAPD3P42695 1498 aa42.95■■■■■ 4.47
CKLF-207ENST00000534692 SMARCA2P51531 1590 aa42.95■■■■■ 4.47
CKLF-207ENST00000534692 MROH2BQ7Z745 1585 aa42.94■■■■■ 4.46
CKLF-207ENST00000534692 PEG3Q9GZU2 1588 aa42.88■■■■■ 4.45
CKLF-207ENST00000534692 HMGXB3Q12766 1538 aa42.78■■■■■ 4.44
CKLF-207ENST00000534692 BAZ1BQ9UIG0 1483 aaKnown RBP42.61■■■■■ 4.41
CKLF-207ENST00000534692 WIZO95785 1651 aa42.5■■■■■ 4.39
CKLF-207ENST00000534692 RSF1Q96T23 1441 aaPredicted RBP42.46■■■■■ 4.39
CKLF-207ENST00000534692 TOP2AP11388 1531 aaKnown RBP42.06■■■■■ 4.32
CKLF-207ENST00000534692 NESP48681 1621 aa41.86■■■■■ 4.29
CKLF-207ENST00000534692 LAMC3Q9Y6N6 1575 aa41.83■■■■■ 4.29
CKLF-207ENST00000534692 CADPSQ9ULU8 1353 aa41.66■■■■■ 4.26
CKLF-207ENST00000534692 ERCC6Q03468 1493 aa41.64■■■■■ 4.26
CKLF-207ENST00000534692 CCDC88BA6NC98 1476 aa41.52■■■■■ 4.24
CKLF-207ENST00000534692 PDS5BQ9NTI5 1447 aa41.48■■■■■ 4.23
CKLF-207ENST00000534692 CFTRP13569 1480 aa41.47■■■■■ 4.23
CKLF-207ENST00000534692 KIF21AQ7Z4S6 1674 aa41.45■■■■■ 4.23
CKLF-207ENST00000534692 SUPT5HO00267 1087 aaKnown RBP41.3■■■■■ 4.2
CKLF-207ENST00000534692 THOC2Q8NI27 1593 aaKnown RBP41.29■■■■■ 4.2
CKLF-207ENST00000534692 PRDM2Q13029 1718 aa41.28■■■■■ 4.2
CKLF-207ENST00000534692 CUX2O14529 1486 aa41.25■■■■■ 4.19
CKLF-207ENST00000534692 FANCD2Q9BXW9 1451 aa41.19■■■■■ 4.18
CKLF-207ENST00000534692 CEP164Q9UPV0 1460 aa41.14■■■■■ 4.18
CKLF-207ENST00000534692 MRC2Q9UBG0 1479 aa41.09■■■■■ 4.17
CKLF-207ENST00000534692 WDR62O43379 1518 aa40.98■■■■■ 4.15
CKLF-207ENST00000534692 URB2Q14146 1524 aaKnown RBP40.8■■■■■ 4.12
CKLF-207ENST00000534692 ABCC8Q09428 1581 aa40.57■■■■■ 4.09
CKLF-207ENST00000534692 TOPBP1Q92547 1522 aa40.57■■■■■ 4.08
CKLF-207ENST00000534692 DNMBPQ6XZF7 1577 aa40.55■■■■■ 4.08
CKLF-207ENST00000534692 CUX1P39880 1505 aa40.28■■■■■ 4.04
CKLF-207ENST00000534692 IFT140Q96RY7 1462 aa40.28■■■■■ 4.04
CKLF-207ENST00000534692 POLA1P09884 1462 aaPredicted RBP40.22■■■■■ 4.03
CKLF-207ENST00000534692 TARBP1Q13395 1621 aaKnown RBP40.16■■■■■ 4.02
CKLF-207ENST00000534692 FGD5Q6ZNL6 1462 aa40.13■■■■■ 4.01
CKLF-207ENST00000534692 ZNF608Q9ULD9 1512 aaPredicted RBP40.07■■■■■ 4.01
CKLF-207ENST00000534692 WRNQ14191 1432 aaPredicted RBP eCLIP40.02■■■■■ 4
CKLF-207ENST00000534692 BIVM-ERCC5R4GMW8 1640 aa40.02■■■■■ 4
CKLF-207ENST00000534692 SOGA1O94964 1423 aa40.01■■■■■ 4
CKLF-207ENST00000534692 RAD54L2Q9Y4B4 1467 aa40■■■■□ 3.99
CKLF-207ENST00000534692 TOP2BQ02880 1626 aa39.98■■■■□ 3.99
CKLF-207ENST00000534692 EIF4G3O43432 1585 aaKnown RBP39.97■■■■□ 3.99
CKLF-207ENST00000534692 SYNJ1O43426 1573 aa39.96■■■■□ 3.99
CKLF-207ENST00000534692 WDR97A6NE52 1622 aa39.89■■■■□ 3.98
CKLF-207ENST00000534692 AQRO60306 1485 aaKnown RBP eCLIP39.83■■■■□ 3.97
CKLF-207ENST00000534692 DNAJC5Q9H3Z4 198 aa39.83■■■■□ 3.97
CKLF-207ENST00000534692 ABCA10Q8WWZ4 1543 aa39.76■■■■□ 3.96
CKLF-207ENST00000534692 TDRD9Q8NDG6 1382 aaKnown RBP39.75■■■■□ 3.95
CKLF-207ENST00000534692 ABCA5Q8WWZ7 1642 aa39.64■■■■□ 3.94
CKLF-207ENST00000534692 GAPVD1Q14C86 1478 aa39.58■■■■□ 3.93
CKLF-207ENST00000534692 GRIN2BQ13224 1484 aa39.57■■■■□ 3.93
CKLF-207ENST00000534692 PBRM1Q86U86 1689 aa39.57■■■■□ 3.92
CKLF-207ENST00000534692 SNAPC4Q5SXM2 1469 aa39.49■■■■□ 3.91
CKLF-207ENST00000534692 MAGI1Q96QZ7 1491 aaPredicted RBP39.49■■■■□ 3.91
CKLF-207ENST00000534692 CHD1O14646 1710 aa39.48■■■■□ 3.91
CKLF-207ENST00000534692 OSCARQ8IYS5 282 aa39.46■■■■□ 3.91
CKLF-207ENST00000534692 SYNJ2O15056 1496 aa39.31■■■■□ 3.88
CKLF-207ENST00000534692 ERICH3Q5RHP9 1530 aa39.3■■■■□ 3.88
CKLF-207ENST00000534692 FBLN2P98095 1184 aa39.25■■■■□ 3.87
CKLF-207ENST00000534692 ADAMTS12P58397 1594 aa39.24■■■■□ 3.87
CKLF-207ENST00000534692 CHMP7Q8WUX9 453 aaPredicted RBP39.2■■■■□ 3.87
CKLF-207ENST00000534692 KIF27Q86VH2 1401 aa39.18■■■■□ 3.86
CKLF-207ENST00000534692 FHAD1B1AJZ9 1412 aa39.13■■■■□ 3.85
CKLF-207ENST00000534692 GRIN2AQ12879 1464 aa39.08■■■■□ 3.85
CKLF-207ENST00000534692 CLASP1Q7Z460 1538 aa39.04■■■■□ 3.84
CKLF-207ENST00000534692 TRIM41Q8WV44 630 aa39.03■■■■□ 3.84
CKLF-207ENST00000534692 IGF1RP08069 1367 aa39■■■■□ 3.83
CKLF-207ENST00000534692 CUL7Q14999 1698 aa38.98■■■■□ 3.83
CKLF-207ENST00000534692 NUP160Q12769 1436 aa38.91■■■■□ 3.82
CKLF-207ENST00000534692 RIMBP3CA6NJZ7 1639 aa38.91■■■■□ 3.82
CKLF-207ENST00000534692 RIMBP3BA6NNM3 1639 aa38.91■■■■□ 3.82
CKLF-207ENST00000534692 RIMBP3Q9UFD9 1639 aa38.91■■■■□ 3.82
CKLF-207ENST00000534692 ARHGEF11O15085 1522 aa38.89■■■■□ 3.82
CKLF-207ENST00000534692 CEP170Q5SW79 1584 aa38.89■■■■□ 3.82
CKLF-207ENST00000534692 RUSC2Q8N2Y8 1516 aa38.83■■■■□ 3.81
CKLF-207ENST00000534692 CARMIL1Q5VZK9 1371 aa38.76■■■■□ 3.8
CKLF-207ENST00000534692 SHROOM2Q13796 1616 aa38.67■■■■□ 3.78
CKLF-207ENST00000534692 CHIC1Q5VXU3 224 aa38.64■■■■□ 3.78
CKLF-207ENST00000534692 ARAP1Q96P48 1450 aa38.59■■■■□ 3.77
CKLF-207ENST00000534692 RAPGEF2Q9Y4G8 1499 aa38.56■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms