RNA–Protein interactions for RNA: ENST00000563092.1

CKLF-208, Transcript of chemokine like factor, humanhuman

TSL 3

Gene CKLF, Length 365 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKLF-208ENST00000563092 AEBP2Q6ZN18 517 aaPredicted RBP22.91■■□□□ 1.26
CKLF-208ENST00000563092 CHIC1Q5VXU3 224 aa21.6■■□□□ 1.05
CKLF-208ENST00000563092 NISCHQ9Y2I1 1504 aa21.52■■□□□ 1.04
CKLF-208ENST00000563092 ABCC9O60706 1549 aa19.64■□□□□ 0.73
CKLF-208ENST00000563092 SENP3Q9H4L4 574 aaPredicted RBP19.59■□□□□ 0.73
CKLF-208ENST00000563092 CCDC180Q9P1Z9 1646 aa19.43■□□□□ 0.7
CKLF-208ENST00000563092 PHF23Q9BUL5 403 aaPredicted RBP19.26■□□□□ 0.67
CKLF-208ENST00000563092 DNAJC5BQ9UF47 199 aa18.76■□□□□ 0.59
CKLF-208ENST00000563092 RB1CC1Q8TDY2 1594 aa18.6■□□□□ 0.57
CKLF-208ENST00000563092 NACADO15069 1562 aa18.45■□□□□ 0.54
CKLF-208ENST00000563092 FOXD1Q16676 465 aa18.26■□□□□ 0.51
CKLF-208ENST00000563092 PABPN1Q86U42 306 aaKnown RBP eCLIP18.22■□□□□ 0.51
CKLF-208ENST00000563092 MYO15BQ96JP2 1530 aa18.18■□□□□ 0.5
CKLF-208ENST00000563092 UNC13AQ9UPW8 1703 aa18.16■□□□□ 0.5
CKLF-208ENST00000563092 BICRAQ9NZM4 1560 aa18.13■□□□□ 0.49
CKLF-208ENST00000563092 DCAF8L2P0C7V8 631 aa18.08■□□□□ 0.48
CKLF-208ENST00000563092 SHROOM4Q9ULL8 1493 aa17.9■□□□□ 0.46
CKLF-208ENST00000563092 DCAF1Q9Y4B6 1507 aa17.82■□□□□ 0.44
CKLF-208ENST00000563092 ZCCHC6Q5VYS8 1495 aaKnown RBP17.78■□□□□ 0.44
CKLF-208ENST00000563092 CC2D2AQ9P2K1 1620 aa17.76■□□□□ 0.43
CKLF-208ENST00000563092 CECR2Q9BXF3 1484 aa17.75■□□□□ 0.43
CKLF-208ENST00000563092 EIF4G1Q04637 1599 aaKnown RBP17.67■□□□□ 0.42
CKLF-208ENST00000563092 SCRIBQ14160 1630 aa17.6■□□□□ 0.41
CKLF-208ENST00000563092 DNAJC5Q9H3Z4 198 aa17.44■□□□□ 0.38
CKLF-208ENST00000563092 MSH5O43196 834 aa17.18■□□□□ 0.34
CKLF-208ENST00000563092 PLPPR3Q6T4P5 718 aa17.17■□□□□ 0.34
CKLF-208ENST00000563092 CUX2O14529 1486 aa17.12■□□□□ 0.33
CKLF-208ENST00000563092 NCAPD3P42695 1498 aa17.07■□□□□ 0.32
CKLF-208ENST00000563092 POTEDQ86YR6 584 aa17.05■□□□□ 0.32
CKLF-208ENST00000563092 PIAS4Q8N2W9 510 aaPredicted RBP17.04■□□□□ 0.32
CKLF-208ENST00000563092 ERCC6Q03468 1493 aa16.94■□□□□ 0.3
CKLF-208ENST00000563092 ATAD2BQ9ULI0 1458 aa16.94■□□□□ 0.3
CKLF-208ENST00000563092 PPP6R1Q9UPN7 881 aa16.91■□□□□ 0.3
CKLF-208ENST00000563092 HMGXB3Q12766 1538 aa16.89■□□□□ 0.29
CKLF-208ENST00000563092 ADRA2BP18089 450 aa16.86■□□□□ 0.29
CKLF-208ENST00000563092 SMARCA2P51531 1590 aa16.85■□□□□ 0.29
CKLF-208ENST00000563092 SMARCA4P51532 1647 aa16.82■□□□□ 0.28
CKLF-208ENST00000563092 NESP48681 1621 aa16.81■□□□□ 0.28
CKLF-208ENST00000563092 THOC2Q8NI27 1593 aaKnown RBP16.74■□□□□ 0.27
CKLF-208ENST00000563092 PEG3Q9GZU2 1588 aa16.74■□□□□ 0.27
CKLF-208ENST00000563092 BAZ1AQ9NRL2 1556 aaPredicted RBP16.7■□□□□ 0.26
CKLF-208ENST00000563092 BAZ1BQ9UIG0 1483 aaKnown RBP16.7■□□□□ 0.26
CKLF-208ENST00000563092 LAMC3Q9Y6N6 1575 aa16.68■□□□□ 0.26
CKLF-208ENST00000563092 PDS5BQ9NTI5 1447 aa16.58■□□□□ 0.24
CKLF-208ENST00000563092 KIF21AQ7Z4S6 1674 aa16.56■□□□□ 0.24
CKLF-208ENST00000563092 MROH2BQ7Z745 1585 aa16.55■□□□□ 0.24
CKLF-208ENST00000563092 CADPSQ9ULU8 1353 aa16.49■□□□□ 0.23
CKLF-208ENST00000563092 WDR62O43379 1518 aa16.45■□□□□ 0.22
CKLF-208ENST00000563092 MRC2Q9UBG0 1479 aa16.45■□□□□ 0.22
CKLF-208ENST00000563092 TRIM41Q8WV44 630 aa16.4■□□□□ 0.22
CKLF-208ENST00000563092 CEP164Q9UPV0 1460 aa16.31■□□□□ 0.2
CKLF-208ENST00000563092 WIZO95785 1651 aa16.3■□□□□ 0.2
CKLF-208ENST00000563092 FANCD2Q9BXW9 1451 aa16.28■□□□□ 0.2
CKLF-208ENST00000563092 CFTRP13569 1480 aa16.27■□□□□ 0.19
CKLF-208ENST00000563092 OSCARQ8IYS5 282 aa16.23■□□□□ 0.19
CKLF-208ENST00000563092 URB2Q14146 1524 aaKnown RBP16.19■□□□□ 0.18
CKLF-208ENST00000563092 RSF1Q96T23 1441 aaPredicted RBP16.12■□□□□ 0.17
CKLF-208ENST00000563092 TOP2AP11388 1531 aaKnown RBP16.12■□□□□ 0.17
CKLF-208ENST00000563092 RIMBP3CA6NJZ7 1639 aa16.06■□□□□ 0.16
CKLF-208ENST00000563092 RIMBP3BA6NNM3 1639 aa16.06■□□□□ 0.16
CKLF-208ENST00000563092 RIMBP3Q9UFD9 1639 aa16.06■□□□□ 0.16
CKLF-208ENST00000563092 ZNF608Q9ULD9 1512 aaPredicted RBP16.02■□□□□ 0.15
CKLF-208ENST00000563092 IFT140Q96RY7 1462 aa16.02■□□□□ 0.15
CKLF-208ENST00000563092 ARHGEF11O15085 1522 aa16■□□□□ 0.15
CKLF-208ENST00000563092 PRDM2Q13029 1718 aa16■□□□□ 0.15
CKLF-208ENST00000563092 TOPBP1Q92547 1522 aa15.95■□□□□ 0.14
CKLF-208ENST00000563092 CCDC88BA6NC98 1476 aa15.94■□□□□ 0.14
CKLF-208ENST00000563092 ABCC8Q09428 1581 aa15.91■□□□□ 0.14
CKLF-208ENST00000563092 EIF4G3O43432 1585 aaKnown RBP15.9■□□□□ 0.14
CKLF-208ENST00000563092 DNMBPQ6XZF7 1577 aa15.86■□□□□ 0.13
CKLF-208ENST00000563092 TARBP1Q13395 1621 aaKnown RBP15.86■□□□□ 0.13
CKLF-208ENST00000563092 ARAP1Q96P48 1450 aa15.84■□□□□ 0.13
CKLF-208ENST00000563092 CYB5RLQ6IPT4 315 aa15.83■□□□□ 0.12
CKLF-208ENST00000563092 AQRO60306 1485 aaKnown RBP eCLIP15.82■□□□□ 0.12
CKLF-208ENST00000563092 CHD1O14646 1710 aa15.8■□□□□ 0.12
CKLF-208ENST00000563092 POLA1P09884 1462 aaPredicted RBP15.78■□□□□ 0.12
CKLF-208ENST00000563092 CLASP1Q7Z460 1538 aa15.7■□□□□ 0.1
CKLF-208ENST00000563092 WDR97A6NE52 1622 aa15.69■□□□□ 0.1
CKLF-208ENST00000563092 RAD54L2Q9Y4B4 1467 aa15.69■□□□□ 0.1
CKLF-208ENST00000563092 TRHP20396 242 aaPredicted RBP15.68■□□□□ 0.1
CKLF-208ENST00000563092 SOGA1O94964 1423 aa15.67■□□□□ 0.1
CKLF-208ENST00000563092 TDRD9Q8NDG6 1382 aaKnown RBP15.66■□□□□ 0.1
CKLF-208ENST00000563092 FBLN2P98095 1184 aa15.66■□□□□ 0.1
CKLF-208ENST00000563092 SNAPC4Q5SXM2 1469 aa15.65■□□□□ 0.1
CKLF-208ENST00000563092 MAGI1Q96QZ7 1491 aaPredicted RBP15.63■□□□□ 0.09
CKLF-208ENST00000563092 FGD5Q6ZNL6 1462 aa15.61■□□□□ 0.09
CKLF-208ENST00000563092 SYNJ1O43426 1573 aa15.6■□□□□ 0.09
CKLF-208ENST00000563092 GRIN2BQ13224 1484 aa15.59■□□□□ 0.09
CKLF-208ENST00000563092 SYNJ2O15056 1496 aa15.58■□□□□ 0.08
CKLF-208ENST00000563092 CUX1P39880 1505 aa15.58■□□□□ 0.08
CKLF-208ENST00000563092 CHMP7Q8WUX9 453 aaPredicted RBP15.56■□□□□ 0.08
CKLF-208ENST00000563092 MAPK8IP2Q13387 824 aaPredicted RBP15.51■□□□□ 0.07
CKLF-208ENST00000563092 DMRT2Q9Y5R5 561 aa15.5■□□□□ 0.07
CKLF-208ENST00000563092 GAPVD1Q14C86 1478 aa15.5■□□□□ 0.07
CKLF-208ENST00000563092 ABCA10Q8WWZ4 1543 aa15.46■□□□□ 0.07
CKLF-208ENST00000563092 ABCA5Q8WWZ7 1642 aa15.46■□□□□ 0.06
CKLF-208ENST00000563092 PBRM1Q86U86 1689 aa15.45■□□□□ 0.06
CKLF-208ENST00000563092 SCAF1Q9H7N4 1312 aaKnown RBP15.43■□□□□ 0.06
CKLF-208ENST00000563092 ERCC6L2Q5T890 1561 aa15.4■□□□□ 0.06
CKLF-208ENST00000563092 NUP160Q12769 1436 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms