Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
COL4A3BPQ9Y5P4 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
COL4A3BPQ9Y5P4 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
COL4A3BPQ9Y5P4 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.11■■■□□ 2.57
COL4A3BPQ9Y5P4 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.08■■■□□ 2.57
COL4A3BPQ9Y5P4 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.06■■■□□ 2.56
COL4A3BPQ9Y5P4 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
COL4A3BPQ9Y5P4 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.02■■■□□ 2.56
COL4A3BPQ9Y5P4 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL4A3BPQ9Y5P4 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.01■■■□□ 2.55
COL4A3BPQ9Y5P4 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
COL4A3BPQ9Y5P4 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.99■■■□□ 2.55
COL4A3BPQ9Y5P4 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.99■■■□□ 2.55
COL4A3BPQ9Y5P4 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.99■■■□□ 2.55
COL4A3BPQ9Y5P4 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
COL4A3BPQ9Y5P4 SETD8P1-201ENST00000623146 1180 ntBASIC30.98■■■□□ 2.55
COL4A3BPQ9Y5P4 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL4A3BPQ9Y5P4 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL4A3BPQ9Y5P4 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL4A3BPQ9Y5P4 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC30.96■■■□□ 2.55
COL4A3BPQ9Y5P4 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.96■■■□□ 2.55
COL4A3BPQ9Y5P4 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC30.96■■■□□ 2.55
COL4A3BPQ9Y5P4 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
COL4A3BPQ9Y5P4 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
COL4A3BPQ9Y5P4 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
COL4A3BPQ9Y5P4 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.9■■■□□ 2.54
COL4A3BPQ9Y5P4 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
COL4A3BPQ9Y5P4 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC30.89■■■□□ 2.54
COL4A3BPQ9Y5P4 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
COL4A3BPQ9Y5P4 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.88■■■□□ 2.53
COL4A3BPQ9Y5P4 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.88■■■□□ 2.53
COL4A3BPQ9Y5P4 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC30.87■■■□□ 2.53
COL4A3BPQ9Y5P4 AC097358.2-201ENST00000607541 1159 ntBASIC30.87■■■□□ 2.53
COL4A3BPQ9Y5P4 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC30.86■■■□□ 2.53
COL4A3BPQ9Y5P4 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
COL4A3BPQ9Y5P4 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.85■■■□□ 2.53
COL4A3BPQ9Y5P4 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.85■■■□□ 2.53
COL4A3BPQ9Y5P4 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC30.84■■■□□ 2.53
COL4A3BPQ9Y5P4 AC136428.2-201ENST00000563187 214 ntBASIC30.84■■■□□ 2.53
COL4A3BPQ9Y5P4 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC30.84■■■□□ 2.53
COL4A3BPQ9Y5P4 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.83■■■□□ 2.53
COL4A3BPQ9Y5P4 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL4A3BPQ9Y5P4 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC30.82■■■□□ 2.53
COL4A3BPQ9Y5P4 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.82■■■□□ 2.52
COL4A3BPQ9Y5P4 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.8■■■□□ 2.52
COL4A3BPQ9Y5P4 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL4A3BPQ9Y5P4 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL4A3BPQ9Y5P4 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC30.78■■■□□ 2.52
COL4A3BPQ9Y5P4 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL4A3BPQ9Y5P4 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.76■■■□□ 2.52
COL4A3BPQ9Y5P4 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
COL4A3BPQ9Y5P4 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
COL4A3BPQ9Y5P4 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
COL4A3BPQ9Y5P4 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
COL4A3BPQ9Y5P4 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.74■■■□□ 2.51
COL4A3BPQ9Y5P4 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
COL4A3BPQ9Y5P4 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.72■■■□□ 2.51
COL4A3BPQ9Y5P4 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
COL4A3BPQ9Y5P4 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.7■■■□□ 2.51
COL4A3BPQ9Y5P4 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
COL4A3BPQ9Y5P4 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.7■■■□□ 2.5
COL4A3BPQ9Y5P4 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
COL4A3BPQ9Y5P4 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC30.69■■■□□ 2.5
COL4A3BPQ9Y5P4 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.69■■■□□ 2.5
COL4A3BPQ9Y5P4 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
COL4A3BPQ9Y5P4 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL4A3BPQ9Y5P4 AL133380.1-201ENST00000506013 324 ntBASIC30.66■■■□□ 2.5
COL4A3BPQ9Y5P4 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.66■■■□□ 2.5
COL4A3BPQ9Y5P4 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
COL4A3BPQ9Y5P4 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
COL4A3BPQ9Y5P4 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL4A3BPQ9Y5P4 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL4A3BPQ9Y5P4 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
COL4A3BPQ9Y5P4 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.58■■■□□ 2.49
COL4A3BPQ9Y5P4 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
COL4A3BPQ9Y5P4 SUZ12P1-203ENST00000578195 985 ntBASIC30.58■■■□□ 2.49
COL4A3BPQ9Y5P4 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC30.57■■■□□ 2.48
COL4A3BPQ9Y5P4 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.57■■■□□ 2.48
COL4A3BPQ9Y5P4 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
COL4A3BPQ9Y5P4 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
COL4A3BPQ9Y5P4 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.54■■■□□ 2.48
COL4A3BPQ9Y5P4 CAHM-201ENST00000604200 896 ntBASIC30.53■■■□□ 2.48
COL4A3BPQ9Y5P4 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
COL4A3BPQ9Y5P4 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC30.52■■■□□ 2.48
COL4A3BPQ9Y5P4 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.52■■■□□ 2.48
COL4A3BPQ9Y5P4 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
COL4A3BPQ9Y5P4 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL4A3BPQ9Y5P4 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.49■■■□□ 2.47
COL4A3BPQ9Y5P4 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.49■■■□□ 2.47
COL4A3BPQ9Y5P4 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
COL4A3BPQ9Y5P4 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
COL4A3BPQ9Y5P4 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL4A3BPQ9Y5P4 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.47■■■□□ 2.47
COL4A3BPQ9Y5P4 ST7-205ENST00000393446 2114 ntTSL 5 BASIC30.46■■■□□ 2.47
COL4A3BPQ9Y5P4 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
COL4A3BPQ9Y5P4 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.46■■■□□ 2.47
COL4A3BPQ9Y5P4 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.46■■■□□ 2.47
COL4A3BPQ9Y5P4 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.46■■■□□ 2.47
COL4A3BPQ9Y5P4 AL391121.1-201ENST00000607967 1349 ntBASIC30.46■■■□□ 2.47
COL4A3BPQ9Y5P4 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms