Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
TM9SF3Q9HD45 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC27.97■■■□□ 2.07
TM9SF3Q9HD45 CAHM-201ENST00000604200 896 ntBASIC27.96■■■□□ 2.07
TM9SF3Q9HD45 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC27.95■■■□□ 2.06
TM9SF3Q9HD45 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
TM9SF3Q9HD45 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC27.93■■■□□ 2.06
TM9SF3Q9HD45 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
TM9SF3Q9HD45 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC27.91■■■□□ 2.06
TM9SF3Q9HD45 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
TM9SF3Q9HD45 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC27.89■■■□□ 2.06
TM9SF3Q9HD45 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
TM9SF3Q9HD45 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
TM9SF3Q9HD45 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
TM9SF3Q9HD45 AL133380.1-201ENST00000506013 324 ntBASIC27.84■■■□□ 2.05
TM9SF3Q9HD45 AL391121.1-201ENST00000607967 1349 ntBASIC27.84■■■□□ 2.05
TM9SF3Q9HD45 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC27.84■■■□□ 2.05
TM9SF3Q9HD45 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
TM9SF3Q9HD45 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC27.8■■■□□ 2.04
TM9SF3Q9HD45 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC27.8■■■□□ 2.04
TM9SF3Q9HD45 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC27.78■■■□□ 2.04
TM9SF3Q9HD45 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC27.76■■■□□ 2.03
TM9SF3Q9HD45 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC27.76■■■□□ 2.03
TM9SF3Q9HD45 AL162393.1-201ENST00000437852 946 ntBASIC27.75■■■□□ 2.03
TM9SF3Q9HD45 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC27.74■■■□□ 2.03
TM9SF3Q9HD45 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
TM9SF3Q9HD45 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC27.73■■■□□ 2.03
TM9SF3Q9HD45 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC27.73■■■□□ 2.03
TM9SF3Q9HD45 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
TM9SF3Q9HD45 AP006261.1-201ENST00000584783 668 ntBASIC27.71■■■□□ 2.03
TM9SF3Q9HD45 NRG1-221ENST00000614767 762 ntTSL 5 BASIC27.7■■■□□ 2.02
TM9SF3Q9HD45 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC27.69■■■□□ 2.02
TM9SF3Q9HD45 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
TM9SF3Q9HD45 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC27.68■■■□□ 2.02
TM9SF3Q9HD45 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC27.67■■■□□ 2.02
TM9SF3Q9HD45 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
TM9SF3Q9HD45 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
TM9SF3Q9HD45 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC27.66■■■□□ 2.02
TM9SF3Q9HD45 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC27.65■■■□□ 2.02
TM9SF3Q9HD45 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
TM9SF3Q9HD45 EBPL-202ENST00000378268 680 ntTSL 3 BASIC27.64■■■□□ 2.02
TM9SF3Q9HD45 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
TM9SF3Q9HD45 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
TM9SF3Q9HD45 HNRNPLP2-201ENST00000568980 1570 ntBASIC27.63■■■□□ 2.01
TM9SF3Q9HD45 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
TM9SF3Q9HD45 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
TM9SF3Q9HD45 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC27.62■■■□□ 2.01
TM9SF3Q9HD45 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
TM9SF3Q9HD45 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC27.61■■■□□ 2.01
TM9SF3Q9HD45 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
TM9SF3Q9HD45 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC27.59■■■□□ 2.01
TM9SF3Q9HD45 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
TM9SF3Q9HD45 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
TM9SF3Q9HD45 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
TM9SF3Q9HD45 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC27.57■■■□□ 2
TM9SF3Q9HD45 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC27.57■■■□□ 2
TM9SF3Q9HD45 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC27.55■■■□□ 2
TM9SF3Q9HD45 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
TM9SF3Q9HD45 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC27.53■■■□□ 2
TM9SF3Q9HD45 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
TM9SF3Q9HD45 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
TM9SF3Q9HD45 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
TM9SF3Q9HD45 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC27.48■■□□□ 1.99
TM9SF3Q9HD45 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC27.48■■□□□ 1.99
TM9SF3Q9HD45 MIR3665-201ENST00000578708 105 ntBASIC27.48■■□□□ 1.99
TM9SF3Q9HD45 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC27.47■■□□□ 1.99
TM9SF3Q9HD45 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC27.47■■□□□ 1.99
TM9SF3Q9HD45 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC27.46■■□□□ 1.99
TM9SF3Q9HD45 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC27.46■■□□□ 1.99
TM9SF3Q9HD45 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC27.45■■□□□ 1.98
TM9SF3Q9HD45 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
TM9SF3Q9HD45 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
TM9SF3Q9HD45 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
TM9SF3Q9HD45 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC27.44■■□□□ 1.98
TM9SF3Q9HD45 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
TM9SF3Q9HD45 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
TM9SF3Q9HD45 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
TM9SF3Q9HD45 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
TM9SF3Q9HD45 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
TM9SF3Q9HD45 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC27.39■■□□□ 1.98
TM9SF3Q9HD45 CHML-205ENST00000638160 705 ntTSL 3 BASIC27.39■■□□□ 1.98
TM9SF3Q9HD45 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.98
TM9SF3Q9HD45 MIR762-201ENST00000390236 83 ntBASIC27.38■■□□□ 1.97
TM9SF3Q9HD45 DUX4L28-201ENST00000623687 678 ntBASIC27.38■■□□□ 1.97
TM9SF3Q9HD45 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
TM9SF3Q9HD45 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC27.37■■□□□ 1.97
TM9SF3Q9HD45 AC087741.3-201ENST00000624270 1347 ntBASIC27.37■■□□□ 1.97
TM9SF3Q9HD45 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
TM9SF3Q9HD45 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC27.31■■□□□ 1.96
TM9SF3Q9HD45 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC27.3■■□□□ 1.96
TM9SF3Q9HD45 AC005559.1-201ENST00000589661 871 ntBASIC27.3■■□□□ 1.96
TM9SF3Q9HD45 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
TM9SF3Q9HD45 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
TM9SF3Q9HD45 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC27.27■■□□□ 1.96
TM9SF3Q9HD45 ABHD17AP4-201ENST00000411545 909 ntBASIC27.26■■□□□ 1.95
TM9SF3Q9HD45 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
TM9SF3Q9HD45 AC044849.2-201ENST00000606596 710 ntBASIC27.25■■□□□ 1.95
TM9SF3Q9HD45 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC27.24■■□□□ 1.95
TM9SF3Q9HD45 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
TM9SF3Q9HD45 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
TM9SF3Q9HD45 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC27.23■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms