Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AL391121.1-201ENST00000607967 1349 ntBASIC36.09■■■■□ 3.37
USP42Q9H9J4 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC36.09■■■■□ 3.37
USP42Q9H9J4 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC36.07■■■■□ 3.37
USP42Q9H9J4 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
USP42Q9H9J4 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
USP42Q9H9J4 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC36.06■■■■□ 3.36
USP42Q9H9J4 AP006261.1-201ENST00000584783 668 ntBASIC36.06■■■■□ 3.36
USP42Q9H9J4 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC36.06■■■■□ 3.36
USP42Q9H9J4 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC36.05■■■■□ 3.36
USP42Q9H9J4 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
USP42Q9H9J4 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC36.02■■■■□ 3.36
USP42Q9H9J4 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC36.01■■■■□ 3.36
USP42Q9H9J4 AL133380.1-201ENST00000506013 324 ntBASIC36.01■■■■□ 3.35
USP42Q9H9J4 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC36■■■■□ 3.35
USP42Q9H9J4 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC36■■■■□ 3.35
USP42Q9H9J4 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
USP42Q9H9J4 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC35.95■■■■□ 3.35
USP42Q9H9J4 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC35.93■■■■□ 3.34
USP42Q9H9J4 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC35.92■■■■□ 3.34
USP42Q9H9J4 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC35.92■■■■□ 3.34
USP42Q9H9J4 HNRNPLP2-201ENST00000568980 1570 ntBASIC35.89■■■■□ 3.34
USP42Q9H9J4 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC35.85■■■■□ 3.33
USP42Q9H9J4 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
USP42Q9H9J4 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC35.84■■■■□ 3.33
USP42Q9H9J4 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC35.84■■■■□ 3.33
USP42Q9H9J4 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC35.84■■■■□ 3.33
USP42Q9H9J4 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC35.83■■■■□ 3.33
USP42Q9H9J4 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC35.82■■■■□ 3.32
USP42Q9H9J4 EBPL-202ENST00000378268 680 ntTSL 3 BASIC35.75■■■■□ 3.31
USP42Q9H9J4 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC35.75■■■■□ 3.31
USP42Q9H9J4 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC35.73■■■■□ 3.31
USP42Q9H9J4 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC35.72■■■■□ 3.31
USP42Q9H9J4 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC35.71■■■■□ 3.31
USP42Q9H9J4 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
USP42Q9H9J4 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC35.7■■■■□ 3.31
USP42Q9H9J4 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC35.7■■■■□ 3.31
USP42Q9H9J4 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC35.7■■■■□ 3.31
USP42Q9H9J4 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC35.7■■■■□ 3.3
USP42Q9H9J4 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC35.69■■■■□ 3.3
USP42Q9H9J4 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC35.68■■■■□ 3.3
USP42Q9H9J4 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC35.68■■■■□ 3.3
USP42Q9H9J4 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC35.66■■■■□ 3.3
USP42Q9H9J4 MIR3665-201ENST00000578708 105 ntBASIC35.66■■■■□ 3.3
USP42Q9H9J4 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC35.64■■■■□ 3.3
USP42Q9H9J4 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC35.63■■■■□ 3.29
USP42Q9H9J4 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
USP42Q9H9J4 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC35.61■■■■□ 3.29
USP42Q9H9J4 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC35.6■■■■□ 3.29
USP42Q9H9J4 AC087741.3-201ENST00000624270 1347 ntBASIC35.58■■■■□ 3.29
USP42Q9H9J4 ABHD17AP4-201ENST00000411545 909 ntBASIC35.57■■■■□ 3.29
USP42Q9H9J4 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC35.57■■■■□ 3.28
USP42Q9H9J4 MIR7108-201ENST00000614319 87 ntBASIC35.57■■■■□ 3.28
USP42Q9H9J4 DUX4L28-201ENST00000623687 678 ntBASIC35.57■■■■□ 3.28
USP42Q9H9J4 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC35.55■■■■□ 3.28
USP42Q9H9J4 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC35.53■■■■□ 3.28
USP42Q9H9J4 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.27
USP42Q9H9J4 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC35.5■■■■□ 3.27
USP42Q9H9J4 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC35.5■■■■□ 3.27
USP42Q9H9J4 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
USP42Q9H9J4 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC35.49■■■■□ 3.27
USP42Q9H9J4 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
USP42Q9H9J4 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC35.48■■■■□ 3.27
USP42Q9H9J4 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC35.47■■■■□ 3.27
USP42Q9H9J4 MLEC-202ENST00000412616 841 ntTSL 3 BASIC35.45■■■■□ 3.27
USP42Q9H9J4 CHML-205ENST00000638160 705 ntTSL 3 BASIC35.45■■■■□ 3.27
USP42Q9H9J4 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC35.44■■■■□ 3.26
USP42Q9H9J4 MIR762-201ENST00000390236 83 ntBASIC35.43■■■■□ 3.26
USP42Q9H9J4 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC35.43■■■■□ 3.26
USP42Q9H9J4 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC35.42■■■■□ 3.26
USP42Q9H9J4 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
USP42Q9H9J4 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC35.38■■■■□ 3.25
USP42Q9H9J4 AC044849.2-201ENST00000606596 710 ntBASIC35.37■■■■□ 3.25
USP42Q9H9J4 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC35.37■■■■□ 3.25
USP42Q9H9J4 PVT1-219ENST00000523427 938 ntTSL 3 BASIC35.36■■■■□ 3.25
USP42Q9H9J4 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC35.36■■■■□ 3.25
USP42Q9H9J4 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC35.35■■■■□ 3.25
USP42Q9H9J4 AC005559.1-201ENST00000589661 871 ntBASIC35.35■■■■□ 3.25
USP42Q9H9J4 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
USP42Q9H9J4 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
USP42Q9H9J4 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
USP42Q9H9J4 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC35.29■■■■□ 3.24
USP42Q9H9J4 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
USP42Q9H9J4 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC35.28■■■■□ 3.24
USP42Q9H9J4 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC35.26■■■■□ 3.23
USP42Q9H9J4 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC35.24■■■■□ 3.23
USP42Q9H9J4 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
USP42Q9H9J4 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC35.24■■■■□ 3.23
USP42Q9H9J4 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC35.24■■■■□ 3.23
USP42Q9H9J4 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC35.24■■■■□ 3.23
USP42Q9H9J4 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
USP42Q9H9J4 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC35.23■■■■□ 3.23
USP42Q9H9J4 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC35.23■■■■□ 3.23
USP42Q9H9J4 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
USP42Q9H9J4 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC35.22■■■■□ 3.23
USP42Q9H9J4 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC35.21■■■■□ 3.23
USP42Q9H9J4 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
USP42Q9H9J4 DENR-202ENST00000455982 1052 ntTSL 5 BASIC35.2■■■■□ 3.23
USP42Q9H9J4 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC35.2■■■■□ 3.23
USP42Q9H9J4 MBP-237ENST00000579129 1052 ntTSL 5 BASIC35.2■■■■□ 3.23
USP42Q9H9J4 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC35.2■■■■□ 3.23
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms