Protein–RNA interactions for Protein: Q99958

FOXC2, Forkhead box protein C2, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC2Q99958 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
FOXC2Q99958 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
FOXC2Q99958 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC24.03■■□□□ 1.44
FOXC2Q99958 PVT1-219ENST00000523427 938 ntTSL 3 BASIC24.03■■□□□ 1.44
FOXC2Q99958 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
FOXC2Q99958 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
FOXC2Q99958 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
FOXC2Q99958 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC24■■□□□ 1.43
FOXC2Q99958 HLA-V-202ENST00000446817 847 ntBASIC23.98■■□□□ 1.43
FOXC2Q99958 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC23.98■■□□□ 1.43
FOXC2Q99958 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
FOXC2Q99958 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
FOXC2Q99958 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.96■■□□□ 1.43
FOXC2Q99958 AL133380.1-201ENST00000506013 324 ntBASIC23.95■■□□□ 1.42
FOXC2Q99958 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC23.92■■□□□ 1.42
FOXC2Q99958 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
FOXC2Q99958 EBPL-202ENST00000378268 680 ntTSL 3 BASIC23.92■■□□□ 1.42
FOXC2Q99958 AC087741.3-201ENST00000624270 1347 ntBASIC23.91■■□□□ 1.42
FOXC2Q99958 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
FOXC2Q99958 ILK-212ENST00000532063 1617 ntTSL 2 BASIC23.91■■□□□ 1.42
FOXC2Q99958 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC23.9■■□□□ 1.42
FOXC2Q99958 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC23.89■■□□□ 1.42
FOXC2Q99958 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.89■■□□□ 1.41
FOXC2Q99958 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
FOXC2Q99958 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.88■■□□□ 1.41
FOXC2Q99958 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC23.88■■□□□ 1.41
FOXC2Q99958 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
FOXC2Q99958 AC044849.2-201ENST00000606596 710 ntBASIC23.86■■□□□ 1.41
FOXC2Q99958 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.85■■□□□ 1.41
FOXC2Q99958 AC145285.7-201ENST00000614819 1539 ntBASIC23.84■■□□□ 1.41
FOXC2Q99958 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
FOXC2Q99958 DUX4L28-201ENST00000623687 678 ntBASIC23.82■■□□□ 1.4
FOXC2Q99958 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
FOXC2Q99958 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
FOXC2Q99958 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
FOXC2Q99958 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.79■■□□□ 1.4
FOXC2Q99958 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
FOXC2Q99958 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.79■■□□□ 1.4
FOXC2Q99958 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.77■■□□□ 1.4
FOXC2Q99958 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
FOXC2Q99958 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
FOXC2Q99958 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC23.74■■□□□ 1.39
FOXC2Q99958 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
FOXC2Q99958 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
FOXC2Q99958 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
FOXC2Q99958 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
FOXC2Q99958 MIR762-201ENST00000390236 83 ntBASIC23.71■■□□□ 1.39
FOXC2Q99958 AC005559.1-201ENST00000589661 871 ntBASIC23.71■■□□□ 1.39
FOXC2Q99958 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.69■■□□□ 1.38
FOXC2Q99958 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.69■■□□□ 1.38
FOXC2Q99958 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.69■■□□□ 1.38
FOXC2Q99958 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.69■■□□□ 1.38
FOXC2Q99958 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.69■■□□□ 1.38
FOXC2Q99958 ZNRF2P2-203ENST00000454624 420 ntBASIC23.67■■□□□ 1.38
FOXC2Q99958 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
FOXC2Q99958 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.66■■□□□ 1.38
FOXC2Q99958 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC23.65■■□□□ 1.38
FOXC2Q99958 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
FOXC2Q99958 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
FOXC2Q99958 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
FOXC2Q99958 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC23.63■■□□□ 1.37
FOXC2Q99958 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
FOXC2Q99958 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.62■■□□□ 1.37
FOXC2Q99958 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC23.61■■□□□ 1.37
FOXC2Q99958 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC23.6■■□□□ 1.37
FOXC2Q99958 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
FOXC2Q99958 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
FOXC2Q99958 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
FOXC2Q99958 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC23.59■■□□□ 1.37
FOXC2Q99958 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
FOXC2Q99958 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
FOXC2Q99958 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
FOXC2Q99958 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
FOXC2Q99958 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC23.56■■□□□ 1.36
FOXC2Q99958 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
FOXC2Q99958 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
FOXC2Q99958 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.54■■□□□ 1.36
FOXC2Q99958 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
FOXC2Q99958 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
FOXC2Q99958 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC23.53■■□□□ 1.36
FOXC2Q99958 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
FOXC2Q99958 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
FOXC2Q99958 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
FOXC2Q99958 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.5■■□□□ 1.35
FOXC2Q99958 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
FOXC2Q99958 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.48■■□□□ 1.35
FOXC2Q99958 MIR4449-201ENST00000578365 66 ntBASIC23.47■■□□□ 1.35
FOXC2Q99958 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
FOXC2Q99958 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
FOXC2Q99958 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
FOXC2Q99958 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
FOXC2Q99958 DENR-202ENST00000455982 1052 ntTSL 5 BASIC23.45■■□□□ 1.34
FOXC2Q99958 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
FOXC2Q99958 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC23.43■■□□□ 1.34
FOXC2Q99958 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.41■■□□□ 1.34
FOXC2Q99958 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC23.4■■□□□ 1.34
FOXC2Q99958 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
FOXC2Q99958 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
FOXC2Q99958 MIR639-201ENST00000384974 98 ntBASIC23.38■■□□□ 1.33
FOXC2Q99958 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.38■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms