Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC29.92■■■□□ 2.38
CDCA3Q99618 HNRNPLP2-201ENST00000568980 1570 ntBASIC29.91■■■□□ 2.38
CDCA3Q99618 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CDCA3Q99618 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC29.88■■■□□ 2.37
CDCA3Q99618 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC29.88■■■□□ 2.37
CDCA3Q99618 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC29.88■■■□□ 2.37
CDCA3Q99618 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
CDCA3Q99618 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC29.88■■■□□ 2.37
CDCA3Q99618 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC29.87■■■□□ 2.37
CDCA3Q99618 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CDCA3Q99618 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
CDCA3Q99618 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC29.81■■■□□ 2.36
CDCA3Q99618 EBPL-202ENST00000378268 680 ntTSL 3 BASIC29.8■■■□□ 2.36
CDCA3Q99618 MIR3665-201ENST00000578708 105 ntBASIC29.8■■■□□ 2.36
CDCA3Q99618 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
CDCA3Q99618 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC29.77■■■□□ 2.36
CDCA3Q99618 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CDCA3Q99618 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC29.75■■■□□ 2.35
CDCA3Q99618 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC29.75■■■□□ 2.35
CDCA3Q99618 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
CDCA3Q99618 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC29.75■■■□□ 2.35
CDCA3Q99618 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
CDCA3Q99618 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
CDCA3Q99618 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
CDCA3Q99618 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC29.73■■■□□ 2.35
CDCA3Q99618 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC29.72■■■□□ 2.35
CDCA3Q99618 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC29.72■■■□□ 2.35
CDCA3Q99618 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC29.71■■■□□ 2.35
CDCA3Q99618 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC29.71■■■□□ 2.35
CDCA3Q99618 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CDCA3Q99618 ABHD17AP4-201ENST00000411545 909 ntBASIC29.66■■■□□ 2.34
CDCA3Q99618 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
CDCA3Q99618 MIR7108-201ENST00000614319 87 ntBASIC29.63■■■□□ 2.33
CDCA3Q99618 MLEC-202ENST00000412616 841 ntTSL 3 BASIC29.62■■■□□ 2.33
CDCA3Q99618 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CDCA3Q99618 AC087741.3-201ENST00000624270 1347 ntBASIC29.61■■■□□ 2.33
CDCA3Q99618 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CDCA3Q99618 CHML-205ENST00000638160 705 ntTSL 3 BASIC29.59■■■□□ 2.33
CDCA3Q99618 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
CDCA3Q99618 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC29.57■■■□□ 2.32
CDCA3Q99618 DUX4L28-201ENST00000623687 678 ntBASIC29.56■■■□□ 2.32
CDCA3Q99618 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
CDCA3Q99618 AC044849.2-201ENST00000606596 710 ntBASIC29.54■■■□□ 2.32
CDCA3Q99618 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC29.53■■■□□ 2.32
CDCA3Q99618 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
CDCA3Q99618 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC29.51■■■□□ 2.32
CDCA3Q99618 MIR762-201ENST00000390236 83 ntBASIC29.51■■■□□ 2.31
CDCA3Q99618 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC29.51■■■□□ 2.31
CDCA3Q99618 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC29.49■■■□□ 2.31
CDCA3Q99618 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
CDCA3Q99618 AC005559.1-201ENST00000589661 871 ntBASIC29.47■■■□□ 2.31
CDCA3Q99618 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC29.45■■■□□ 2.31
CDCA3Q99618 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
CDCA3Q99618 PVT1-219ENST00000523427 938 ntTSL 3 BASIC29.43■■■□□ 2.3
CDCA3Q99618 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC29.42■■■□□ 2.3
CDCA3Q99618 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
CDCA3Q99618 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC29.42■■■□□ 2.3
CDCA3Q99618 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
CDCA3Q99618 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC29.41■■■□□ 2.3
CDCA3Q99618 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.4■■■□□ 2.3
CDCA3Q99618 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC29.39■■■□□ 2.3
CDCA3Q99618 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
CDCA3Q99618 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC29.38■■■□□ 2.29
CDCA3Q99618 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC29.36■■■□□ 2.29
CDCA3Q99618 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC29.36■■■□□ 2.29
CDCA3Q99618 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CDCA3Q99618 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.35■■■□□ 2.29
CDCA3Q99618 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29.35■■■□□ 2.29
CDCA3Q99618 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC29.34■■■□□ 2.29
CDCA3Q99618 HLA-V-202ENST00000446817 847 ntBASIC29.34■■■□□ 2.29
CDCA3Q99618 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
CDCA3Q99618 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
CDCA3Q99618 DENR-202ENST00000455982 1052 ntTSL 5 BASIC29.32■■■□□ 2.28
CDCA3Q99618 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC29.32■■■□□ 2.28
CDCA3Q99618 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC29.32■■■□□ 2.28
CDCA3Q99618 MBP-237ENST00000579129 1052 ntTSL 5 BASIC29.31■■■□□ 2.28
CDCA3Q99618 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
CDCA3Q99618 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
CDCA3Q99618 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
CDCA3Q99618 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CDCA3Q99618 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.28■■■□□ 2.28
CDCA3Q99618 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC29.28■■■□□ 2.28
CDCA3Q99618 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
CDCA3Q99618 BOD1-206ENST00000480951 814 ntTSL 2 BASIC29.27■■■□□ 2.28
CDCA3Q99618 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CDCA3Q99618 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC29.27■■■□□ 2.28
CDCA3Q99618 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC29.26■■■□□ 2.27
CDCA3Q99618 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC29.26■■■□□ 2.27
CDCA3Q99618 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
CDCA3Q99618 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
CDCA3Q99618 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC29.23■■■□□ 2.27
CDCA3Q99618 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CDCA3Q99618 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.23■■■□□ 2.27
CDCA3Q99618 ZNRF2P2-203ENST00000454624 420 ntBASIC29.21■■■□□ 2.27
CDCA3Q99618 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
CDCA3Q99618 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC29.18■■■□□ 2.26
CDCA3Q99618 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC29.15■■■□□ 2.26
CDCA3Q99618 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC29.14■■■□□ 2.26
CDCA3Q99618 WASH5P-204ENST00000632292 975 ntBASIC29.13■■■□□ 2.25
CDCA3Q99618 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 171.8 ms