Protein–RNA interactions for Protein: Q6ZNE9

RUFY4, RUN and FYVE domain-containing protein 4, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUFY4Q6ZNE9 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
RUFY4Q6ZNE9 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.1■■■□□ 2.57
RUFY4Q6ZNE9 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
RUFY4Q6ZNE9 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
RUFY4Q6ZNE9 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
RUFY4Q6ZNE9 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
RUFY4Q6ZNE9 CAHM-201ENST00000604200 896 ntBASIC31.08■■■□□ 2.57
RUFY4Q6ZNE9 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
RUFY4Q6ZNE9 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
RUFY4Q6ZNE9 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.06■■■□□ 2.56
RUFY4Q6ZNE9 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
RUFY4Q6ZNE9 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.04■■■□□ 2.56
RUFY4Q6ZNE9 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
RUFY4Q6ZNE9 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.02■■■□□ 2.56
RUFY4Q6ZNE9 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.02■■■□□ 2.56
RUFY4Q6ZNE9 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
RUFY4Q6ZNE9 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.01■■■□□ 2.55
RUFY4Q6ZNE9 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC31■■■□□ 2.55
RUFY4Q6ZNE9 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
RUFY4Q6ZNE9 AL133380.1-201ENST00000506013 324 ntBASIC31■■■□□ 2.55
RUFY4Q6ZNE9 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31■■■□□ 2.55
RUFY4Q6ZNE9 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
RUFY4Q6ZNE9 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.99■■■□□ 2.55
RUFY4Q6ZNE9 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC30.99■■■□□ 2.55
RUFY4Q6ZNE9 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.99■■■□□ 2.55
RUFY4Q6ZNE9 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
RUFY4Q6ZNE9 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.96■■■□□ 2.55
RUFY4Q6ZNE9 RPS2P35-201ENST00000443417 897 ntBASIC30.95■■■□□ 2.55
RUFY4Q6ZNE9 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
RUFY4Q6ZNE9 AL391121.1-201ENST00000607967 1349 ntBASIC30.92■■■□□ 2.54
RUFY4Q6ZNE9 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
RUFY4Q6ZNE9 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.91■■■□□ 2.54
RUFY4Q6ZNE9 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
RUFY4Q6ZNE9 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
RUFY4Q6ZNE9 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.8■■■□□ 2.52
RUFY4Q6ZNE9 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
RUFY4Q6ZNE9 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
RUFY4Q6ZNE9 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.77■■■□□ 2.52
RUFY4Q6ZNE9 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.77■■■□□ 2.52
RUFY4Q6ZNE9 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
RUFY4Q6ZNE9 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.75■■■□□ 2.51
RUFY4Q6ZNE9 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.74■■■□□ 2.51
RUFY4Q6ZNE9 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
RUFY4Q6ZNE9 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
RUFY4Q6ZNE9 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
RUFY4Q6ZNE9 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.72■■■□□ 2.51
RUFY4Q6ZNE9 AL162393.1-201ENST00000437852 946 ntBASIC30.72■■■□□ 2.51
RUFY4Q6ZNE9 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.72■■■□□ 2.51
RUFY4Q6ZNE9 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.69■■■□□ 2.5
RUFY4Q6ZNE9 EBPL-202ENST00000378268 680 ntTSL 3 BASIC30.69■■■□□ 2.5
RUFY4Q6ZNE9 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
RUFY4Q6ZNE9 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
RUFY4Q6ZNE9 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
RUFY4Q6ZNE9 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
RUFY4Q6ZNE9 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
RUFY4Q6ZNE9 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
RUFY4Q6ZNE9 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.63■■■□□ 2.49
RUFY4Q6ZNE9 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
RUFY4Q6ZNE9 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.61■■■□□ 2.49
RUFY4Q6ZNE9 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
RUFY4Q6ZNE9 AP006261.1-201ENST00000584783 668 ntBASIC30.6■■■□□ 2.49
RUFY4Q6ZNE9 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
RUFY4Q6ZNE9 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.56■■■□□ 2.48
RUFY4Q6ZNE9 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
RUFY4Q6ZNE9 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.55■■■□□ 2.48
RUFY4Q6ZNE9 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
RUFY4Q6ZNE9 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
RUFY4Q6ZNE9 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.52■■■□□ 2.48
RUFY4Q6ZNE9 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.52■■■□□ 2.48
RUFY4Q6ZNE9 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
RUFY4Q6ZNE9 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
RUFY4Q6ZNE9 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
RUFY4Q6ZNE9 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
RUFY4Q6ZNE9 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
RUFY4Q6ZNE9 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
RUFY4Q6ZNE9 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
RUFY4Q6ZNE9 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.47■■■□□ 2.47
RUFY4Q6ZNE9 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
RUFY4Q6ZNE9 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
RUFY4Q6ZNE9 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
RUFY4Q6ZNE9 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
RUFY4Q6ZNE9 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.45■■■□□ 2.47
RUFY4Q6ZNE9 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
RUFY4Q6ZNE9 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.44■■■□□ 2.46
RUFY4Q6ZNE9 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
RUFY4Q6ZNE9 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC30.43■■■□□ 2.46
RUFY4Q6ZNE9 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
RUFY4Q6ZNE9 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.42■■■□□ 2.46
RUFY4Q6ZNE9 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.41■■■□□ 2.46
RUFY4Q6ZNE9 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
RUFY4Q6ZNE9 MIR762-201ENST00000390236 83 ntBASIC30.41■■■□□ 2.46
RUFY4Q6ZNE9 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.4■■■□□ 2.46
RUFY4Q6ZNE9 MIR3665-201ENST00000578708 105 ntBASIC30.4■■■□□ 2.46
RUFY4Q6ZNE9 DUX4L28-201ENST00000623687 678 ntBASIC30.4■■■□□ 2.46
RUFY4Q6ZNE9 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
RUFY4Q6ZNE9 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC30.38■■■□□ 2.45
RUFY4Q6ZNE9 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.38■■■□□ 2.45
RUFY4Q6ZNE9 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
RUFY4Q6ZNE9 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC30.37■■■□□ 2.45
RUFY4Q6ZNE9 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms