Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CLDN6P56747 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
CLDN6P56747 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC27.2■■□□□ 1.94
CLDN6P56747 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
CLDN6P56747 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC27.2■■□□□ 1.94
CLDN6P56747 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CLDN6P56747 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CLDN6P56747 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
CLDN6P56747 AL133380.1-201ENST00000506013 324 ntBASIC27.17■■□□□ 1.94
CLDN6P56747 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CLDN6P56747 AP006261.1-201ENST00000584783 668 ntBASIC27.16■■□□□ 1.94
CLDN6P56747 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC27.15■■□□□ 1.94
CLDN6P56747 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC27.15■■□□□ 1.94
CLDN6P56747 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
CLDN6P56747 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
CLDN6P56747 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC27.12■■□□□ 1.93
CLDN6P56747 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC27.11■■□□□ 1.93
CLDN6P56747 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
CLDN6P56747 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC27.08■■□□□ 1.93
CLDN6P56747 HNRNPLP2-201ENST00000568980 1570 ntBASIC27.07■■□□□ 1.92
CLDN6P56747 EBPL-202ENST00000378268 680 ntTSL 3 BASIC27.02■■□□□ 1.92
CLDN6P56747 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
CLDN6P56747 MIR7108-201ENST00000614319 87 ntBASIC27.01■■□□□ 1.91
CLDN6P56747 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CLDN6P56747 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
CLDN6P56747 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC27■■□□□ 1.91
CLDN6P56747 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
CLDN6P56747 ABHD17AP4-201ENST00000411545 909 ntBASIC26.99■■□□□ 1.91
CLDN6P56747 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC26.99■■□□□ 1.91
CLDN6P56747 PVT1-219ENST00000523427 938 ntTSL 3 BASIC26.97■■□□□ 1.91
CLDN6P56747 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC26.96■■□□□ 1.91
CLDN6P56747 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
CLDN6P56747 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC26.94■■□□□ 1.9
CLDN6P56747 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC26.92■■□□□ 1.9
CLDN6P56747 DUX4L28-201ENST00000623687 678 ntBASIC26.92■■□□□ 1.9
CLDN6P56747 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CLDN6P56747 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CLDN6P56747 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
CLDN6P56747 MIR3665-201ENST00000578708 105 ntBASIC26.91■■□□□ 1.9
CLDN6P56747 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
CLDN6P56747 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC26.9■■□□□ 1.9
CLDN6P56747 AC087741.3-201ENST00000624270 1347 ntBASIC26.9■■□□□ 1.9
CLDN6P56747 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
CLDN6P56747 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
CLDN6P56747 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
CLDN6P56747 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CLDN6P56747 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
CLDN6P56747 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CLDN6P56747 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
CLDN6P56747 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26.85■■□□□ 1.89
CLDN6P56747 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC26.84■■□□□ 1.89
CLDN6P56747 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CLDN6P56747 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CLDN6P56747 MIR762-201ENST00000390236 83 ntBASIC26.8■■□□□ 1.88
CLDN6P56747 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC26.79■■□□□ 1.88
CLDN6P56747 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
CLDN6P56747 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.78■■□□□ 1.88
CLDN6P56747 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CLDN6P56747 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC26.78■■□□□ 1.88
CLDN6P56747 MLEC-202ENST00000412616 841 ntTSL 3 BASIC26.76■■□□□ 1.87
CLDN6P56747 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC26.75■■□□□ 1.87
CLDN6P56747 CHML-205ENST00000638160 705 ntTSL 3 BASIC26.75■■□□□ 1.87
CLDN6P56747 HLA-V-202ENST00000446817 847 ntBASIC26.74■■□□□ 1.87
CLDN6P56747 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CLDN6P56747 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.72■■□□□ 1.87
CLDN6P56747 AC005559.1-201ENST00000589661 871 ntBASIC26.72■■□□□ 1.87
CLDN6P56747 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC26.71■■□□□ 1.87
CLDN6P56747 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
CLDN6P56747 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC26.71■■□□□ 1.87
CLDN6P56747 AC044849.2-201ENST00000606596 710 ntBASIC26.71■■□□□ 1.87
CLDN6P56747 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
CLDN6P56747 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
CLDN6P56747 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.68■■□□□ 1.86
CLDN6P56747 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC26.67■■□□□ 1.86
CLDN6P56747 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC26.67■■□□□ 1.86
CLDN6P56747 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC26.67■■□□□ 1.86
CLDN6P56747 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC26.67■■□□□ 1.86
CLDN6P56747 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC26.66■■□□□ 1.86
CLDN6P56747 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC26.66■■□□□ 1.86
CLDN6P56747 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
CLDN6P56747 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CLDN6P56747 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
CLDN6P56747 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC26.63■■□□□ 1.85
CLDN6P56747 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CLDN6P56747 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CLDN6P56747 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CLDN6P56747 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC26.57■■□□□ 1.84
CLDN6P56747 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC26.57■■□□□ 1.84
CLDN6P56747 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC26.57■■□□□ 1.84
CLDN6P56747 ZNRF2P2-203ENST00000454624 420 ntBASIC26.57■■□□□ 1.84
CLDN6P56747 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC26.57■■□□□ 1.84
CLDN6P56747 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.56■■□□□ 1.84
CLDN6P56747 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CLDN6P56747 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CLDN6P56747 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
CLDN6P56747 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC26.54■■□□□ 1.84
CLDN6P56747 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC26.54■■□□□ 1.84
CLDN6P56747 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.53■■□□□ 1.84
CLDN6P56747 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
CLDN6P56747 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 8.2 ms