Protein–RNA interactions for Protein: P48230

TM4SF4, Transmembrane 4 L6 family member 4, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF4P48230 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
TM4SF4P48230 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC33.2■■■□□ 2.91
TM4SF4P48230 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC33.18■■■□□ 2.9
TM4SF4P48230 MIR3665-201ENST00000578708 105 ntBASIC33.18■■■□□ 2.9
TM4SF4P48230 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC33.18■■■□□ 2.9
TM4SF4P48230 AC145285.7-201ENST00000614819 1539 ntBASIC33.17■■■□□ 2.9
TM4SF4P48230 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC33.16■■■□□ 2.9
TM4SF4P48230 AL133380.1-201ENST00000506013 324 ntBASIC33.16■■■□□ 2.9
TM4SF4P48230 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC33.16■■■□□ 2.9
TM4SF4P48230 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
TM4SF4P48230 PVT1-219ENST00000523427 938 ntTSL 3 BASIC33.15■■■□□ 2.9
TM4SF4P48230 ILK-212ENST00000532063 1617 ntTSL 2 BASIC33.14■■■□□ 2.9
TM4SF4P48230 MLEC-202ENST00000412616 841 ntTSL 3 BASIC33.14■■■□□ 2.9
TM4SF4P48230 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
TM4SF4P48230 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC33.12■■■□□ 2.89
TM4SF4P48230 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC33.12■■■□□ 2.89
TM4SF4P48230 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
TM4SF4P48230 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC33.11■■■□□ 2.89
TM4SF4P48230 AC087741.3-201ENST00000624270 1347 ntBASIC33.06■■■□□ 2.88
TM4SF4P48230 MBP-237ENST00000579129 1052 ntTSL 5 BASIC33.05■■■□□ 2.88
TM4SF4P48230 EBPL-202ENST00000378268 680 ntTSL 3 BASIC33.04■■■□□ 2.88
TM4SF4P48230 HLA-V-202ENST00000446817 847 ntBASIC33.01■■■□□ 2.87
TM4SF4P48230 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC33■■■□□ 2.87
TM4SF4P48230 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC32.99■■■□□ 2.87
TM4SF4P48230 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
TM4SF4P48230 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC32.96■■■□□ 2.87
TM4SF4P48230 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
TM4SF4P48230 DUX4L28-201ENST00000623687 678 ntBASIC32.95■■■□□ 2.87
TM4SF4P48230 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC32.94■■■□□ 2.86
TM4SF4P48230 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC32.92■■■□□ 2.86
TM4SF4P48230 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
TM4SF4P48230 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
TM4SF4P48230 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC32.9■■■□□ 2.86
TM4SF4P48230 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
TM4SF4P48230 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC32.88■■■□□ 2.85
TM4SF4P48230 AC044849.2-201ENST00000606596 710 ntBASIC32.88■■■□□ 2.85
TM4SF4P48230 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.87■■■□□ 2.85
TM4SF4P48230 CHML-205ENST00000638160 705 ntTSL 3 BASIC32.86■■■□□ 2.85
TM4SF4P48230 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC32.84■■■□□ 2.85
TM4SF4P48230 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC32.84■■■□□ 2.85
TM4SF4P48230 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC32.83■■■□□ 2.85
TM4SF4P48230 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC32.82■■■□□ 2.84
TM4SF4P48230 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
TM4SF4P48230 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC32.82■■■□□ 2.84
TM4SF4P48230 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC32.82■■■□□ 2.84
TM4SF4P48230 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC32.79■■■□□ 2.84
TM4SF4P48230 MIR762-201ENST00000390236 83 ntBASIC32.78■■■□□ 2.84
TM4SF4P48230 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC32.75■■■□□ 2.83
TM4SF4P48230 AC005559.1-201ENST00000589661 871 ntBASIC32.73■■■□□ 2.83
TM4SF4P48230 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC32.71■■■□□ 2.83
TM4SF4P48230 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC32.71■■■□□ 2.83
TM4SF4P48230 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC32.71■■■□□ 2.83
TM4SF4P48230 ZNRF2P2-203ENST00000454624 420 ntBASIC32.7■■■□□ 2.83
TM4SF4P48230 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
TM4SF4P48230 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC32.68■■■□□ 2.82
TM4SF4P48230 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
TM4SF4P48230 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
TM4SF4P48230 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
TM4SF4P48230 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
TM4SF4P48230 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC32.65■■■□□ 2.82
TM4SF4P48230 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC32.65■■■□□ 2.82
TM4SF4P48230 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC32.65■■■□□ 2.82
TM4SF4P48230 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
TM4SF4P48230 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC32.64■■■□□ 2.82
TM4SF4P48230 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
TM4SF4P48230 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
TM4SF4P48230 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC32.61■■■□□ 2.81
TM4SF4P48230 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC32.59■■■□□ 2.81
TM4SF4P48230 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
TM4SF4P48230 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
TM4SF4P48230 BOD1-206ENST00000480951 814 ntTSL 2 BASIC32.58■■■□□ 2.81
TM4SF4P48230 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC32.58■■■□□ 2.81
TM4SF4P48230 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
TM4SF4P48230 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC32.55■■■□□ 2.8
TM4SF4P48230 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
TM4SF4P48230 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
TM4SF4P48230 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
TM4SF4P48230 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC32.47■■■□□ 2.79
TM4SF4P48230 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC32.47■■■□□ 2.79
TM4SF4P48230 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
TM4SF4P48230 HGH1-207ENST00000628266 258 ntTSL 5 BASIC32.47■■■□□ 2.79
TM4SF4P48230 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
TM4SF4P48230 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC32.45■■■□□ 2.79
TM4SF4P48230 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC32.44■■■□□ 2.78
TM4SF4P48230 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC32.44■■■□□ 2.78
TM4SF4P48230 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
TM4SF4P48230 DENR-202ENST00000455982 1052 ntTSL 5 BASIC32.43■■■□□ 2.78
TM4SF4P48230 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
TM4SF4P48230 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
TM4SF4P48230 RPS2-202ENST00000526522 924 ntTSL 2 BASIC32.4■■■□□ 2.78
TM4SF4P48230 MIR4449-201ENST00000578365 66 ntBASIC32.4■■■□□ 2.78
TM4SF4P48230 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC32.37■■■□□ 2.77
TM4SF4P48230 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC32.37■■■□□ 2.77
TM4SF4P48230 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
TM4SF4P48230 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC32.35■■■□□ 2.77
TM4SF4P48230 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC32.34■■■□□ 2.77
TM4SF4P48230 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
TM4SF4P48230 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC32.3■■■□□ 2.76
TM4SF4P48230 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
TM4SF4P48230 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms