Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
CXCL12P48061 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
CXCL12P48061 AL133380.1-201ENST00000506013 324 ntBASIC28.57■■■□□ 2.16
CXCL12P48061 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
CXCL12P48061 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC28.57■■■□□ 2.16
CXCL12P48061 HNRNPLP2-201ENST00000568980 1570 ntBASIC28.56■■■□□ 2.16
CXCL12P48061 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC28.55■■■□□ 2.16
CXCL12P48061 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
CXCL12P48061 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
CXCL12P48061 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC28.53■■■□□ 2.16
CXCL12P48061 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC28.48■■■□□ 2.15
CXCL12P48061 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
CXCL12P48061 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
CXCL12P48061 MIR3665-201ENST00000578708 105 ntBASIC28.47■■■□□ 2.15
CXCL12P48061 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC28.46■■■□□ 2.15
CXCL12P48061 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
CXCL12P48061 EBPL-202ENST00000378268 680 ntTSL 3 BASIC28.45■■■□□ 2.14
CXCL12P48061 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC28.45■■■□□ 2.14
CXCL12P48061 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
CXCL12P48061 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC28.45■■■□□ 2.14
CXCL12P48061 ABHD17AP4-201ENST00000411545 909 ntBASIC28.44■■■□□ 2.14
CXCL12P48061 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
CXCL12P48061 MIR7108-201ENST00000614319 87 ntBASIC28.42■■■□□ 2.14
CXCL12P48061 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC28.41■■■□□ 2.14
CXCL12P48061 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
CXCL12P48061 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC28.4■■■□□ 2.14
CXCL12P48061 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC28.37■■■□□ 2.13
CXCL12P48061 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC28.36■■■□□ 2.13
CXCL12P48061 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC28.36■■■□□ 2.13
CXCL12P48061 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CXCL12P48061 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC28.35■■■□□ 2.13
CXCL12P48061 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CXCL12P48061 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CXCL12P48061 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.32■■■□□ 2.12
CXCL12P48061 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CXCL12P48061 AC087741.3-201ENST00000624270 1347 ntBASIC28.31■■■□□ 2.12
CXCL12P48061 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.3■■■□□ 2.12
CXCL12P48061 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.28■■■□□ 2.12
CXCL12P48061 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
CXCL12P48061 CHML-205ENST00000638160 705 ntTSL 3 BASIC28.26■■■□□ 2.11
CXCL12P48061 DUX4L28-201ENST00000623687 678 ntBASIC28.25■■■□□ 2.11
CXCL12P48061 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
CXCL12P48061 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
CXCL12P48061 AC044849.2-201ENST00000606596 710 ntBASIC28.22■■■□□ 2.11
CXCL12P48061 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.21■■■□□ 2.11
CXCL12P48061 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
CXCL12P48061 MIR762-201ENST00000390236 83 ntBASIC28.2■■■□□ 2.1
CXCL12P48061 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
CXCL12P48061 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC28.17■■■□□ 2.1
CXCL12P48061 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
CXCL12P48061 AC005559.1-201ENST00000589661 871 ntBASIC28.16■■■□□ 2.1
CXCL12P48061 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
CXCL12P48061 HLA-V-202ENST00000446817 847 ntBASIC28.14■■■□□ 2.1
CXCL12P48061 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
CXCL12P48061 MBP-237ENST00000579129 1052 ntTSL 5 BASIC28.13■■■□□ 2.09
CXCL12P48061 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC28.12■■■□□ 2.09
CXCL12P48061 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC28.12■■■□□ 2.09
CXCL12P48061 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC28.11■■■□□ 2.09
CXCL12P48061 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC28.09■■■□□ 2.09
CXCL12P48061 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.09■■■□□ 2.09
CXCL12P48061 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28.08■■■□□ 2.09
CXCL12P48061 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28.08■■■□□ 2.09
CXCL12P48061 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.08■■■□□ 2.09
CXCL12P48061 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CXCL12P48061 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC28.05■■■□□ 2.08
CXCL12P48061 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CXCL12P48061 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC28.04■■■□□ 2.08
CXCL12P48061 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
CXCL12P48061 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC28.01■■■□□ 2.07
CXCL12P48061 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
CXCL12P48061 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC28■■■□□ 2.07
CXCL12P48061 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
CXCL12P48061 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC28■■■□□ 2.07
CXCL12P48061 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC28■■■□□ 2.07
CXCL12P48061 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC28■■■□□ 2.07
CXCL12P48061 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC28■■■□□ 2.07
CXCL12P48061 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
CXCL12P48061 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
CXCL12P48061 BOD1-206ENST00000480951 814 ntTSL 2 BASIC27.99■■■□□ 2.07
CXCL12P48061 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC27.99■■■□□ 2.07
CXCL12P48061 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
CXCL12P48061 ZNRF2P2-203ENST00000454624 420 ntBASIC27.97■■■□□ 2.07
CXCL12P48061 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC27.96■■■□□ 2.07
CXCL12P48061 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
CXCL12P48061 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
CXCL12P48061 DENR-202ENST00000455982 1052 ntTSL 5 BASIC27.94■■■□□ 2.06
CXCL12P48061 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
CXCL12P48061 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
CXCL12P48061 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC27.92■■■□□ 2.06
CXCL12P48061 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
CXCL12P48061 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC27.89■■■□□ 2.06
CXCL12P48061 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC27.89■■■□□ 2.06
CXCL12P48061 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC27.87■■■□□ 2.05
CXCL12P48061 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC27.86■■■□□ 2.05
CXCL12P48061 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC27.86■■■□□ 2.05
CXCL12P48061 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC27.85■■■□□ 2.05
CXCL12P48061 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
CXCL12P48061 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
CXCL12P48061 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC27.84■■■□□ 2.05
CXCL12P48061 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC27.84■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms