Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC36.05■■■■□ 3.36
RFC4P35249 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC36.05■■■■□ 3.36
RFC4P35249 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC36.05■■■■□ 3.36
RFC4P35249 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC36.04■■■■□ 3.36
RFC4P35249 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC36.04■■■■□ 3.36
RFC4P35249 AL133380.1-201ENST00000506013 324 ntBASIC36.04■■■■□ 3.36
RFC4P35249 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC36.04■■■■□ 3.36
RFC4P35249 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC36.03■■■■□ 3.36
RFC4P35249 HNRNPLP2-201ENST00000568980 1570 ntBASIC35.98■■■■□ 3.35
RFC4P35249 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC35.97■■■■□ 3.35
RFC4P35249 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC35.9■■■■□ 3.34
RFC4P35249 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC35.9■■■■□ 3.34
RFC4P35249 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC35.89■■■■□ 3.34
RFC4P35249 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC35.88■■■■□ 3.33
RFC4P35249 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC35.87■■■■□ 3.33
RFC4P35249 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC35.86■■■■□ 3.33
RFC4P35249 EBPL-202ENST00000378268 680 ntTSL 3 BASIC35.86■■■■□ 3.33
RFC4P35249 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC35.85■■■■□ 3.33
RFC4P35249 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC35.84■■■■□ 3.33
RFC4P35249 MIR3665-201ENST00000578708 105 ntBASIC35.83■■■■□ 3.33
RFC4P35249 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC35.82■■■■□ 3.32
RFC4P35249 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC35.81■■■■□ 3.32
RFC4P35249 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC35.81■■■■□ 3.32
RFC4P35249 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
RFC4P35249 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC35.8■■■■□ 3.32
RFC4P35249 ABHD17AP4-201ENST00000411545 909 ntBASIC35.79■■■■□ 3.32
RFC4P35249 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC35.78■■■■□ 3.32
RFC4P35249 MIR7108-201ENST00000614319 87 ntBASIC35.77■■■■□ 3.32
RFC4P35249 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
RFC4P35249 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC35.76■■■■□ 3.32
RFC4P35249 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC35.74■■■■□ 3.31
RFC4P35249 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC35.71■■■■□ 3.31
RFC4P35249 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC35.69■■■■□ 3.3
RFC4P35249 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC35.69■■■■□ 3.3
RFC4P35249 AC087741.3-201ENST00000624270 1347 ntBASIC35.68■■■■□ 3.3
RFC4P35249 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC35.68■■■■□ 3.3
RFC4P35249 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC35.64■■■■□ 3.3
RFC4P35249 MLEC-202ENST00000412616 841 ntTSL 3 BASIC35.63■■■■□ 3.29
RFC4P35249 DUX4L28-201ENST00000623687 678 ntBASIC35.63■■■■□ 3.29
RFC4P35249 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC35.62■■■■□ 3.29
RFC4P35249 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC35.61■■■■□ 3.29
RFC4P35249 PVT1-219ENST00000523427 938 ntTSL 3 BASIC35.6■■■■□ 3.29
RFC4P35249 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC35.59■■■■□ 3.29
RFC4P35249 CHML-205ENST00000638160 705 ntTSL 3 BASIC35.59■■■■□ 3.29
RFC4P35249 MIR762-201ENST00000390236 83 ntBASIC35.55■■■■□ 3.28
RFC4P35249 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
RFC4P35249 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC35.53■■■■□ 3.28
RFC4P35249 AC044849.2-201ENST00000606596 710 ntBASIC35.53■■■■□ 3.28
RFC4P35249 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.28
RFC4P35249 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.28
RFC4P35249 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC35.51■■■■□ 3.28
RFC4P35249 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC35.5■■■■□ 3.27
RFC4P35249 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC35.5■■■■□ 3.27
RFC4P35249 AC005559.1-201ENST00000589661 871 ntBASIC35.49■■■■□ 3.27
RFC4P35249 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC35.49■■■■□ 3.27
RFC4P35249 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
RFC4P35249 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC35.44■■■■□ 3.26
RFC4P35249 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC35.43■■■■□ 3.26
RFC4P35249 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC35.42■■■■□ 3.26
RFC4P35249 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC35.41■■■■□ 3.26
RFC4P35249 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
RFC4P35249 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
RFC4P35249 HLA-V-202ENST00000446817 847 ntBASIC35.4■■■■□ 3.26
RFC4P35249 MBP-237ENST00000579129 1052 ntTSL 5 BASIC35.4■■■■□ 3.26
RFC4P35249 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC35.39■■■■□ 3.26
RFC4P35249 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
RFC4P35249 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC35.38■■■■□ 3.25
RFC4P35249 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC35.37■■■■□ 3.25
RFC4P35249 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC35.37■■■■□ 3.25
RFC4P35249 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC35.37■■■■□ 3.25
RFC4P35249 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC35.37■■■■□ 3.25
RFC4P35249 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
RFC4P35249 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
RFC4P35249 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC35.34■■■■□ 3.25
RFC4P35249 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC35.34■■■■□ 3.25
RFC4P35249 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC35.34■■■■□ 3.25
RFC4P35249 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC35.3■■■■□ 3.24
RFC4P35249 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
RFC4P35249 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
RFC4P35249 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC35.27■■■■□ 3.24
RFC4P35249 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC35.25■■■■□ 3.23
RFC4P35249 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC35.25■■■■□ 3.23
RFC4P35249 DENR-202ENST00000455982 1052 ntTSL 5 BASIC35.24■■■■□ 3.23
RFC4P35249 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
RFC4P35249 BOD1-206ENST00000480951 814 ntTSL 2 BASIC35.23■■■■□ 3.23
RFC4P35249 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC35.23■■■■□ 3.23
RFC4P35249 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC35.23■■■■□ 3.23
RFC4P35249 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC35.22■■■■□ 3.23
RFC4P35249 ZNRF2P2-203ENST00000454624 420 ntBASIC35.22■■■■□ 3.23
RFC4P35249 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
RFC4P35249 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC35.21■■■■□ 3.23
RFC4P35249 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC35.21■■■■□ 3.23
RFC4P35249 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC35.18■■■■□ 3.22
RFC4P35249 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC35.18■■■■□ 3.22
RFC4P35249 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC35.18■■■■□ 3.22
RFC4P35249 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
RFC4P35249 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC35.15■■■■□ 3.22
RFC4P35249 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC35.11■■■■□ 3.21
RFC4P35249 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC35.1■■■■□ 3.21
RFC4P35249 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC35.09■■■■□ 3.21
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms