Protein–RNA interactions for Protein: P27694

RPA1, Replication protein A 70 kDa DNA-binding subunit, humanhuman

Predictions only

Length 616 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1P27694 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.23■■■□□ 2.59
RPA1P27694 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.19■■■□□ 2.58
RPA1P27694 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
RPA1P27694 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
RPA1P27694 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.18■■■□□ 2.58
RPA1P27694 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
RPA1P27694 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
RPA1P27694 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.17■■■□□ 2.58
RPA1P27694 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31.16■■■□□ 2.58
RPA1P27694 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.16■■■□□ 2.58
RPA1P27694 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.14■■■□□ 2.58
RPA1P27694 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.13■■■□□ 2.57
RPA1P27694 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC31.13■■■□□ 2.57
RPA1P27694 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
RPA1P27694 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.11■■■□□ 2.57
RPA1P27694 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
RPA1P27694 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.11■■■□□ 2.57
RPA1P27694 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.11■■■□□ 2.57
RPA1P27694 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.1■■■□□ 2.57
RPA1P27694 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.1■■■□□ 2.57
RPA1P27694 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
RPA1P27694 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
RPA1P27694 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.08■■■□□ 2.57
RPA1P27694 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.07■■■□□ 2.56
RPA1P27694 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
RPA1P27694 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
RPA1P27694 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
RPA1P27694 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.03■■■□□ 2.56
RPA1P27694 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
RPA1P27694 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.01■■■□□ 2.55
RPA1P27694 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
RPA1P27694 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.98■■■□□ 2.55
RPA1P27694 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
RPA1P27694 RARRES2P7-201ENST00000567349 469 ntBASIC30.95■■■□□ 2.55
RPA1P27694 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.94■■■□□ 2.54
RPA1P27694 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
RPA1P27694 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.9■■■□□ 2.54
RPA1P27694 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
RPA1P27694 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
RPA1P27694 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
RPA1P27694 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
RPA1P27694 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.87■■■□□ 2.53
RPA1P27694 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
RPA1P27694 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.86■■■□□ 2.53
RPA1P27694 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.82■■■□□ 2.52
RPA1P27694 SETD8P1-201ENST00000623146 1180 ntBASIC30.8■■■□□ 2.52
RPA1P27694 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.79■■■□□ 2.52
RPA1P27694 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
RPA1P27694 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
RPA1P27694 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.79■■■□□ 2.52
RPA1P27694 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
RPA1P27694 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.77■■■□□ 2.52
RPA1P27694 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
RPA1P27694 AL133380.1-201ENST00000506013 324 ntBASIC30.77■■■□□ 2.52
RPA1P27694 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
RPA1P27694 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
RPA1P27694 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
RPA1P27694 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
RPA1P27694 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.72■■■□□ 2.51
RPA1P27694 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.72■■■□□ 2.51
RPA1P27694 AC120057.4-201ENST00000624722 1615 ntBASIC30.72■■■□□ 2.51
RPA1P27694 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.7■■■□□ 2.51
RPA1P27694 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC30.7■■■□□ 2.51
RPA1P27694 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.7■■■□□ 2.51
RPA1P27694 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
RPA1P27694 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.7■■■□□ 2.5
RPA1P27694 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
RPA1P27694 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.69■■■□□ 2.5
RPA1P27694 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.68■■■□□ 2.5
RPA1P27694 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
RPA1P27694 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
RPA1P27694 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RPA1P27694 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
RPA1P27694 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RPA1P27694 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RPA1P27694 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RPA1P27694 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
RPA1P27694 AC136428.2-201ENST00000563187 214 ntBASIC30.63■■■□□ 2.49
RPA1P27694 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.63■■■□□ 2.49
RPA1P27694 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
RPA1P27694 AC097358.2-201ENST00000607541 1159 ntBASIC30.61■■■□□ 2.49
RPA1P27694 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
RPA1P27694 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.58■■■□□ 2.49
RPA1P27694 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.58■■■□□ 2.49
RPA1P27694 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
RPA1P27694 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC30.57■■■□□ 2.48
RPA1P27694 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
RPA1P27694 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.56■■■□□ 2.48
RPA1P27694 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.56■■■□□ 2.48
RPA1P27694 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
RPA1P27694 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
RPA1P27694 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
RPA1P27694 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
RPA1P27694 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.54■■■□□ 2.48
RPA1P27694 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
RPA1P27694 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
RPA1P27694 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
RPA1P27694 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
RPA1P27694 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
RPA1P27694 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.52■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 330.6 ms