Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
APOBP04114 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC18.06■□□□□ 0.48
APOBP04114 MIR3665-201ENST00000578708 105 ntBASIC18.06■□□□□ 0.48
APOBP04114 MBP-237ENST00000579129 1052 ntTSL 5 BASIC18.06■□□□□ 0.48
APOBP04114 MIR7108-201ENST00000614319 87 ntBASIC18.06■□□□□ 0.48
APOBP04114 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC18.06■□□□□ 0.48
APOBP04114 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC18.05■□□□□ 0.48
APOBP04114 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
APOBP04114 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC18.05■□□□□ 0.48
APOBP04114 AL133380.1-201ENST00000506013 324 ntBASIC18.05■□□□□ 0.48
APOBP04114 DUX4L28-201ENST00000623687 678 ntBASIC18.04■□□□□ 0.48
APOBP04114 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
APOBP04114 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC18.04■□□□□ 0.48
APOBP04114 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC18.03■□□□□ 0.48
APOBP04114 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
APOBP04114 AC087741.3-201ENST00000624270 1347 ntBASIC18.01■□□□□ 0.47
APOBP04114 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
APOBP04114 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC17.99■□□□□ 0.47
APOBP04114 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
APOBP04114 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
APOBP04114 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC17.97■□□□□ 0.47
APOBP04114 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
APOBP04114 MIR762-201ENST00000390236 83 ntBASIC17.96■□□□□ 0.47
APOBP04114 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
APOBP04114 MLEC-202ENST00000412616 841 ntTSL 3 BASIC17.95■□□□□ 0.46
APOBP04114 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC17.95■□□□□ 0.46
APOBP04114 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
APOBP04114 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
APOBP04114 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC17.94■□□□□ 0.46
APOBP04114 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC17.94■□□□□ 0.46
APOBP04114 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC17.93■□□□□ 0.46
APOBP04114 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
APOBP04114 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
APOBP04114 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
APOBP04114 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC17.91■□□□□ 0.46
APOBP04114 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
APOBP04114 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
APOBP04114 EBPL-202ENST00000378268 680 ntTSL 3 BASIC17.9■□□□□ 0.46
APOBP04114 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
APOBP04114 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC17.89■□□□□ 0.45
APOBP04114 MVK-208ENST00000539696 608 ntTSL 5 BASIC17.88■□□□□ 0.45
APOBP04114 RPS2-202ENST00000526522 924 ntTSL 2 BASIC17.88■□□□□ 0.45
APOBP04114 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
APOBP04114 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC17.85■□□□□ 0.45
APOBP04114 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
APOBP04114 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
APOBP04114 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
APOBP04114 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
APOBP04114 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
APOBP04114 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC17.83■□□□□ 0.44
APOBP04114 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
APOBP04114 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC17.81■□□□□ 0.44
APOBP04114 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC17.81■□□□□ 0.44
APOBP04114 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
APOBP04114 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC17.8■□□□□ 0.44
APOBP04114 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
APOBP04114 AC005559.1-201ENST00000589661 871 ntBASIC17.79■□□□□ 0.44
APOBP04114 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
APOBP04114 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC17.79■□□□□ 0.44
APOBP04114 AC044849.2-201ENST00000606596 710 ntBASIC17.79■□□□□ 0.44
APOBP04114 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC17.78■□□□□ 0.44
APOBP04114 CHML-205ENST00000638160 705 ntTSL 3 BASIC17.78■□□□□ 0.44
APOBP04114 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC17.77■□□□□ 0.44
APOBP04114 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC17.77■□□□□ 0.44
APOBP04114 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC17.77■□□□□ 0.44
APOBP04114 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
APOBP04114 ILK-212ENST00000532063 1617 ntTSL 2 BASIC17.76■□□□□ 0.43
APOBP04114 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
APOBP04114 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
APOBP04114 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
APOBP04114 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
APOBP04114 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC17.73■□□□□ 0.43
APOBP04114 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
APOBP04114 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
APOBP04114 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
APOBP04114 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
APOBP04114 HGH1-207ENST00000628266 258 ntTSL 5 BASIC17.72■□□□□ 0.43
APOBP04114 MIR4449-201ENST00000578365 66 ntBASIC17.71■□□□□ 0.43
APOBP04114 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
APOBP04114 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
APOBP04114 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC17.69■□□□□ 0.42
APOBP04114 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
APOBP04114 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
APOBP04114 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
APOBP04114 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC17.67■□□□□ 0.42
APOBP04114 HSD17B1P1-201ENST00000590052 955 ntBASIC17.67■□□□□ 0.42
APOBP04114 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
APOBP04114 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
APOBP04114 DENR-202ENST00000455982 1052 ntTSL 5 BASIC17.66■□□□□ 0.42
APOBP04114 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
APOBP04114 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
APOBP04114 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC17.65■□□□□ 0.42
APOBP04114 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
APOBP04114 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
APOBP04114 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
APOBP04114 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
APOBP04114 ZNRF2P2-203ENST00000454624 420 ntBASIC17.64■□□□□ 0.41
APOBP04114 MACF1-219ENST00000484793 834 ntTSL 2 BASIC17.62■□□□□ 0.41
APOBP04114 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
APOBP04114 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms