Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PDGFAP04085 NRG1-221ENST00000614767 762 ntTSL 5 BASIC26.02■■□□□ 1.76
PDGFAP04085 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
PDGFAP04085 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC25.99■■□□□ 1.75
PDGFAP04085 AL391121.1-201ENST00000607967 1349 ntBASIC25.98■■□□□ 1.75
PDGFAP04085 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PDGFAP04085 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PDGFAP04085 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
PDGFAP04085 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
PDGFAP04085 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
PDGFAP04085 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PDGFAP04085 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
PDGFAP04085 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
PDGFAP04085 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC25.93■■□□□ 1.74
PDGFAP04085 AL133380.1-201ENST00000506013 324 ntBASIC25.93■■□□□ 1.74
PDGFAP04085 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
PDGFAP04085 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.91■■□□□ 1.74
PDGFAP04085 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
PDGFAP04085 AP006261.1-201ENST00000584783 668 ntBASIC25.9■■□□□ 1.74
PDGFAP04085 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
PDGFAP04085 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC25.88■■□□□ 1.73
PDGFAP04085 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
PDGFAP04085 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC25.87■■□□□ 1.73
PDGFAP04085 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PDGFAP04085 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC25.84■■□□□ 1.73
PDGFAP04085 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
PDGFAP04085 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
PDGFAP04085 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
PDGFAP04085 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
PDGFAP04085 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC25.81■■□□□ 1.72
PDGFAP04085 HNRNPLP2-201ENST00000568980 1570 ntBASIC25.8■■□□□ 1.72
PDGFAP04085 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC25.76■■□□□ 1.71
PDGFAP04085 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
PDGFAP04085 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC25.75■■□□□ 1.71
PDGFAP04085 EBPL-202ENST00000378268 680 ntTSL 3 BASIC25.74■■□□□ 1.71
PDGFAP04085 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.71■■□□□ 1.71
PDGFAP04085 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PDGFAP04085 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.7■■□□□ 1.7
PDGFAP04085 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC25.7■■□□□ 1.7
PDGFAP04085 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC25.7■■□□□ 1.7
PDGFAP04085 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
PDGFAP04085 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
PDGFAP04085 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
PDGFAP04085 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC25.66■■□□□ 1.7
PDGFAP04085 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
PDGFAP04085 MIR3665-201ENST00000578708 105 ntBASIC25.65■■□□□ 1.7
PDGFAP04085 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.64■■□□□ 1.7
PDGFAP04085 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PDGFAP04085 ABHD17AP4-201ENST00000411545 909 ntBASIC25.63■■□□□ 1.69
PDGFAP04085 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC25.63■■□□□ 1.69
PDGFAP04085 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
PDGFAP04085 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PDGFAP04085 MIR7108-201ENST00000614319 87 ntBASIC25.61■■□□□ 1.69
PDGFAP04085 DUX4L28-201ENST00000623687 678 ntBASIC25.61■■□□□ 1.69
PDGFAP04085 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PDGFAP04085 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC25.61■■□□□ 1.69
PDGFAP04085 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PDGFAP04085 AC087741.3-201ENST00000624270 1347 ntBASIC25.61■■□□□ 1.69
PDGFAP04085 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PDGFAP04085 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC25.6■■□□□ 1.69
PDGFAP04085 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC25.59■■□□□ 1.69
PDGFAP04085 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
PDGFAP04085 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
PDGFAP04085 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
PDGFAP04085 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
PDGFAP04085 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.68
PDGFAP04085 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
PDGFAP04085 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PDGFAP04085 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PDGFAP04085 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
PDGFAP04085 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC25.55■■□□□ 1.68
PDGFAP04085 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC25.55■■□□□ 1.68
PDGFAP04085 MIR762-201ENST00000390236 83 ntBASIC25.53■■□□□ 1.68
PDGFAP04085 PVT1-219ENST00000523427 938 ntTSL 3 BASIC25.52■■□□□ 1.68
PDGFAP04085 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC25.52■■□□□ 1.68
PDGFAP04085 CHML-205ENST00000638160 705 ntTSL 3 BASIC25.52■■□□□ 1.68
PDGFAP04085 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
PDGFAP04085 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
PDGFAP04085 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC25.49■■□□□ 1.67
PDGFAP04085 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PDGFAP04085 MLEC-202ENST00000412616 841 ntTSL 3 BASIC25.48■■□□□ 1.67
PDGFAP04085 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PDGFAP04085 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
PDGFAP04085 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC25.46■■□□□ 1.67
PDGFAP04085 AC005559.1-201ENST00000589661 871 ntBASIC25.45■■□□□ 1.66
PDGFAP04085 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
PDGFAP04085 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC25.44■■□□□ 1.66
PDGFAP04085 AC044849.2-201ENST00000606596 710 ntBASIC25.44■■□□□ 1.66
PDGFAP04085 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
PDGFAP04085 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
PDGFAP04085 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
PDGFAP04085 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PDGFAP04085 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PDGFAP04085 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
PDGFAP04085 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC25.41■■□□□ 1.66
PDGFAP04085 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC25.41■■□□□ 1.66
PDGFAP04085 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC25.41■■□□□ 1.66
PDGFAP04085 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
PDGFAP04085 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PDGFAP04085 ST7-205ENST00000393446 2114 ntTSL 5 BASIC25.4■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms