Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC29.13■■■□□ 2.25
PDGFBP01127 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC29.12■■■□□ 2.25
PDGFBP01127 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC29.11■■■□□ 2.25
PDGFBP01127 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC29.1■■■□□ 2.25
PDGFBP01127 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
PDGFBP01127 AC145285.7-201ENST00000614819 1539 ntBASIC29.09■■■□□ 2.25
PDGFBP01127 MLEC-202ENST00000412616 841 ntTSL 3 BASIC29.08■■■□□ 2.25
PDGFBP01127 MIR3665-201ENST00000578708 105 ntBASIC29.06■■■□□ 2.24
PDGFBP01127 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC29.05■■■□□ 2.24
PDGFBP01127 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
PDGFBP01127 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC29.05■■■□□ 2.24
PDGFBP01127 AL133380.1-201ENST00000506013 324 ntBASIC29.05■■■□□ 2.24
PDGFBP01127 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
PDGFBP01127 AC087741.3-201ENST00000624270 1347 ntBASIC29.02■■■□□ 2.24
PDGFBP01127 MVK-208ENST00000539696 608 ntTSL 5 BASIC29.02■■■□□ 2.24
PDGFBP01127 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29■■■□□ 2.23
PDGFBP01127 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC28.99■■■□□ 2.23
PDGFBP01127 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
PDGFBP01127 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
PDGFBP01127 EBPL-202ENST00000378268 680 ntTSL 3 BASIC28.97■■■□□ 2.23
PDGFBP01127 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC28.97■■■□□ 2.23
PDGFBP01127 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.97■■■□□ 2.23
PDGFBP01127 DUX4L28-201ENST00000623687 678 ntBASIC28.97■■■□□ 2.23
PDGFBP01127 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
PDGFBP01127 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
PDGFBP01127 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC28.93■■■□□ 2.22
PDGFBP01127 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC28.93■■■□□ 2.22
PDGFBP01127 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC28.92■■■□□ 2.22
PDGFBP01127 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC28.91■■■□□ 2.22
PDGFBP01127 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.91■■■□□ 2.22
PDGFBP01127 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28.89■■■□□ 2.22
PDGFBP01127 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28.89■■■□□ 2.22
PDGFBP01127 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.87■■■□□ 2.21
PDGFBP01127 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC28.87■■■□□ 2.21
PDGFBP01127 AC044849.2-201ENST00000606596 710 ntBASIC28.84■■■□□ 2.21
PDGFBP01127 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC28.83■■■□□ 2.21
PDGFBP01127 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.82■■■□□ 2.2
PDGFBP01127 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC28.81■■■□□ 2.2
PDGFBP01127 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC28.8■■■□□ 2.2
PDGFBP01127 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
PDGFBP01127 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC28.79■■■□□ 2.2
PDGFBP01127 ILK-212ENST00000532063 1617 ntTSL 2 BASIC28.79■■■□□ 2.2
PDGFBP01127 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC28.78■■■□□ 2.2
PDGFBP01127 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
PDGFBP01127 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PDGFBP01127 MIR762-201ENST00000390236 83 ntBASIC28.76■■■□□ 2.19
PDGFBP01127 ZNRF2P2-203ENST00000454624 420 ntBASIC28.76■■■□□ 2.19
PDGFBP01127 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
PDGFBP01127 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
PDGFBP01127 CHML-205ENST00000638160 705 ntTSL 3 BASIC28.75■■■□□ 2.19
PDGFBP01127 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC28.73■■■□□ 2.19
PDGFBP01127 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC28.73■■■□□ 2.19
PDGFBP01127 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC28.72■■■□□ 2.19
PDGFBP01127 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC28.72■■■□□ 2.19
PDGFBP01127 AC005559.1-201ENST00000589661 871 ntBASIC28.71■■■□□ 2.19
PDGFBP01127 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
PDGFBP01127 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC28.69■■■□□ 2.18
PDGFBP01127 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC28.68■■■□□ 2.18
PDGFBP01127 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
PDGFBP01127 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC28.66■■■□□ 2.18
PDGFBP01127 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
PDGFBP01127 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
PDGFBP01127 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC28.64■■■□□ 2.18
PDGFBP01127 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
PDGFBP01127 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC28.62■■■□□ 2.17
PDGFBP01127 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
PDGFBP01127 RPS2-202ENST00000526522 924 ntTSL 2 BASIC28.61■■■□□ 2.17
PDGFBP01127 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC28.6■■■□□ 2.17
PDGFBP01127 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
PDGFBP01127 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
PDGFBP01127 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
PDGFBP01127 BOD1-206ENST00000480951 814 ntTSL 2 BASIC28.58■■■□□ 2.17
PDGFBP01127 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC28.58■■■□□ 2.17
PDGFBP01127 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC28.58■■■□□ 2.17
PDGFBP01127 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC28.57■■■□□ 2.16
PDGFBP01127 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
PDGFBP01127 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
PDGFBP01127 HGH1-207ENST00000628266 258 ntTSL 5 BASIC28.53■■■□□ 2.16
PDGFBP01127 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
PDGFBP01127 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
PDGFBP01127 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
PDGFBP01127 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
PDGFBP01127 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC28.49■■■□□ 2.15
PDGFBP01127 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
PDGFBP01127 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC28.47■■■□□ 2.15
PDGFBP01127 MIR4449-201ENST00000578365 66 ntBASIC28.46■■■□□ 2.15
PDGFBP01127 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC28.43■■■□□ 2.14
PDGFBP01127 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC28.43■■■□□ 2.14
PDGFBP01127 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC28.42■■■□□ 2.14
PDGFBP01127 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC28.42■■■□□ 2.14
PDGFBP01127 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
PDGFBP01127 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
PDGFBP01127 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
PDGFBP01127 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC28.38■■■□□ 2.13
PDGFBP01127 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC28.36■■■□□ 2.13
PDGFBP01127 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
PDGFBP01127 DENR-202ENST00000455982 1052 ntTSL 5 BASIC28.34■■■□□ 2.13
PDGFBP01127 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
PDGFBP01127 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
PDGFBP01127 MIR639-201ENST00000384974 98 ntBASIC28.32■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms