Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 ABHD17AP4-201ENST00000411545 909 ntBASIC27.81■■■□□ 2.04
CDX4O14627 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC27.81■■■□□ 2.04
CDX4O14627 MIR7108-201ENST00000614319 87 ntBASIC27.81■■■□□ 2.04
CDX4O14627 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC27.81■■■□□ 2.04
CDX4O14627 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
CDX4O14627 AL133380.1-201ENST00000506013 324 ntBASIC27.8■■■□□ 2.04
CDX4O14627 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
CDX4O14627 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
CDX4O14627 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
CDX4O14627 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC27.74■■■□□ 2.03
CDX4O14627 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC27.74■■■□□ 2.03
CDX4O14627 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC27.73■■■□□ 2.03
CDX4O14627 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC27.72■■■□□ 2.03
CDX4O14627 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC27.72■■■□□ 2.03
CDX4O14627 MIR3665-201ENST00000578708 105 ntBASIC27.72■■■□□ 2.03
CDX4O14627 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
CDX4O14627 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
CDX4O14627 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC27.69■■■□□ 2.02
CDX4O14627 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC27.69■■■□□ 2.02
CDX4O14627 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
CDX4O14627 EBPL-202ENST00000378268 680 ntTSL 3 BASIC27.67■■■□□ 2.02
CDX4O14627 PVT1-219ENST00000523427 938 ntTSL 3 BASIC27.67■■■□□ 2.02
CDX4O14627 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
CDX4O14627 MLEC-202ENST00000412616 841 ntTSL 3 BASIC27.64■■■□□ 2.02
CDX4O14627 AC087741.3-201ENST00000624270 1347 ntBASIC27.64■■■□□ 2.01
CDX4O14627 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
CDX4O14627 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC27.6■■■□□ 2.01
CDX4O14627 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
CDX4O14627 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC27.59■■■□□ 2.01
CDX4O14627 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
CDX4O14627 DUX4L28-201ENST00000623687 678 ntBASIC27.57■■■□□ 2
CDX4O14627 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC27.56■■■□□ 2
CDX4O14627 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC27.56■■■□□ 2
CDX4O14627 MBP-237ENST00000579129 1052 ntTSL 5 BASIC27.56■■■□□ 2
CDX4O14627 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC27.55■■■□□ 2
CDX4O14627 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
CDX4O14627 HLA-V-202ENST00000446817 847 ntBASIC27.52■■■□□ 2
CDX4O14627 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC27.51■■□□□ 1.99
CDX4O14627 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC27.5■■□□□ 1.99
CDX4O14627 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC27.5■■□□□ 1.99
CDX4O14627 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
CDX4O14627 CHML-205ENST00000638160 705 ntTSL 3 BASIC27.49■■□□□ 1.99
CDX4O14627 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC27.48■■□□□ 1.99
CDX4O14627 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC27.48■■□□□ 1.99
CDX4O14627 AC044849.2-201ENST00000606596 710 ntBASIC27.48■■□□□ 1.99
CDX4O14627 MIR762-201ENST00000390236 83 ntBASIC27.45■■□□□ 1.98
CDX4O14627 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
CDX4O14627 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CDX4O14627 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC27.44■■□□□ 1.98
CDX4O14627 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC27.43■■□□□ 1.98
CDX4O14627 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC27.43■■□□□ 1.98
CDX4O14627 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
CDX4O14627 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC27.42■■□□□ 1.98
CDX4O14627 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC27.42■■□□□ 1.98
CDX4O14627 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC27.4■■□□□ 1.98
CDX4O14627 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
CDX4O14627 AC005559.1-201ENST00000589661 871 ntBASIC27.39■■□□□ 1.98
CDX4O14627 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CDX4O14627 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC27.36■■□□□ 1.97
CDX4O14627 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CDX4O14627 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CDX4O14627 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
CDX4O14627 ZNRF2P2-203ENST00000454624 420 ntBASIC27.32■■□□□ 1.96
CDX4O14627 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC27.32■■□□□ 1.96
CDX4O14627 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC27.3■■□□□ 1.96
CDX4O14627 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC27.3■■□□□ 1.96
CDX4O14627 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC27.29■■□□□ 1.96
CDX4O14627 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC27.29■■□□□ 1.96
CDX4O14627 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC27.29■■□□□ 1.96
CDX4O14627 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CDX4O14627 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC27.28■■□□□ 1.96
CDX4O14627 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC27.26■■□□□ 1.95
CDX4O14627 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC27.26■■□□□ 1.95
CDX4O14627 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CDX4O14627 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CDX4O14627 BOD1-206ENST00000480951 814 ntTSL 2 BASIC27.24■■□□□ 1.95
CDX4O14627 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CDX4O14627 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC27.22■■□□□ 1.95
CDX4O14627 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
CDX4O14627 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CDX4O14627 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CDX4O14627 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CDX4O14627 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CDX4O14627 DENR-202ENST00000455982 1052 ntTSL 5 BASIC27.17■■□□□ 1.94
CDX4O14627 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CDX4O14627 HGH1-207ENST00000628266 258 ntTSL 5 BASIC27.15■■□□□ 1.94
CDX4O14627 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC27.15■■□□□ 1.94
CDX4O14627 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CDX4O14627 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC27.12■■□□□ 1.93
CDX4O14627 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
CDX4O14627 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
CDX4O14627 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
CDX4O14627 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
CDX4O14627 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CDX4O14627 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
CDX4O14627 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC27.09■■□□□ 1.93
CDX4O14627 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC27.09■■□□□ 1.93
CDX4O14627 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC27.09■■□□□ 1.93
CDX4O14627 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CDX4O14627 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC27.08■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms