Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
CBX4O00257 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
CBX4O00257 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC28.49■■■□□ 2.15
CBX4O00257 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
CBX4O00257 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC28.45■■■□□ 2.14
CBX4O00257 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC28.44■■■□□ 2.14
CBX4O00257 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC28.44■■■□□ 2.14
CBX4O00257 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC28.44■■■□□ 2.14
CBX4O00257 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC28.42■■■□□ 2.14
CBX4O00257 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
CBX4O00257 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
CBX4O00257 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC28.37■■■□□ 2.13
CBX4O00257 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC28.37■■■□□ 2.13
CBX4O00257 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CBX4O00257 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC28.36■■■□□ 2.13
CBX4O00257 SETD8P1-201ENST00000623146 1180 ntBASIC28.36■■■□□ 2.13
CBX4O00257 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC28.36■■■□□ 2.13
CBX4O00257 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CBX4O00257 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CBX4O00257 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC28.32■■■□□ 2.12
CBX4O00257 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CBX4O00257 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CBX4O00257 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC28.3■■■□□ 2.12
CBX4O00257 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC28.3■■■□□ 2.12
CBX4O00257 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CBX4O00257 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC28.29■■■□□ 2.12
CBX4O00257 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC28.29■■■□□ 2.12
CBX4O00257 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CBX4O00257 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC28.27■■■□□ 2.12
CBX4O00257 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC28.25■■■□□ 2.11
CBX4O00257 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC28.24■■■□□ 2.11
CBX4O00257 AC097358.2-201ENST00000607541 1159 ntBASIC28.24■■■□□ 2.11
CBX4O00257 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
CBX4O00257 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
CBX4O00257 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC28.23■■■□□ 2.11
CBX4O00257 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
CBX4O00257 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CBX4O00257 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC28.22■■■□□ 2.11
CBX4O00257 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC28.21■■■□□ 2.11
CBX4O00257 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.11
CBX4O00257 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
CBX4O00257 AC136428.2-201ENST00000563187 214 ntBASIC28.18■■■□□ 2.1
CBX4O00257 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CBX4O00257 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC28.17■■■□□ 2.1
CBX4O00257 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
CBX4O00257 AL133380.1-201ENST00000506013 324 ntBASIC28.16■■■□□ 2.1
CBX4O00257 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
CBX4O00257 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
CBX4O00257 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
CBX4O00257 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.1
CBX4O00257 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC28.14■■■□□ 2.1
CBX4O00257 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC28.13■■■□□ 2.09
CBX4O00257 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
CBX4O00257 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
CBX4O00257 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC28.12■■■□□ 2.09
CBX4O00257 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CBX4O00257 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
CBX4O00257 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC28.1■■■□□ 2.09
CBX4O00257 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC28.09■■■□□ 2.09
CBX4O00257 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
CBX4O00257 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
CBX4O00257 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CBX4O00257 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC28.08■■■□□ 2.09
CBX4O00257 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC28.07■■■□□ 2.08
CBX4O00257 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CBX4O00257 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CBX4O00257 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CBX4O00257 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC28.03■■■□□ 2.08
CBX4O00257 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
CBX4O00257 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
CBX4O00257 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
CBX4O00257 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC28.01■■■□□ 2.07
CBX4O00257 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC28■■■□□ 2.07
CBX4O00257 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC28■■■□□ 2.07
CBX4O00257 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
CBX4O00257 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC27.98■■■□□ 2.07
CBX4O00257 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
CBX4O00257 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
CBX4O00257 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
CBX4O00257 SUZ12P1-203ENST00000578195 985 ntBASIC27.95■■■□□ 2.06
CBX4O00257 CAHM-201ENST00000604200 896 ntBASIC27.95■■■□□ 2.06
CBX4O00257 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
CBX4O00257 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
CBX4O00257 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC27.91■■■□□ 2.06
CBX4O00257 AL391121.1-201ENST00000607967 1349 ntBASIC27.91■■■□□ 2.06
CBX4O00257 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
CBX4O00257 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
CBX4O00257 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
CBX4O00257 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
CBX4O00257 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
CBX4O00257 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC27.87■■■□□ 2.05
CBX4O00257 RPS2P35-201ENST00000443417 897 ntBASIC27.87■■■□□ 2.05
CBX4O00257 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC27.87■■■□□ 2.05
CBX4O00257 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC27.87■■■□□ 2.05
CBX4O00257 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
CBX4O00257 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC27.87■■■□□ 2.05
CBX4O00257 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
CBX4O00257 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC27.84■■■□□ 2.05
CBX4O00257 AC120057.4-201ENST00000624722 1615 ntBASIC27.83■■■□□ 2.05
CBX4O00257 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC27.83■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms