Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC26.11■■□□□ 1.77
COL6A6A6NMZ7 AC044849.2-201ENST00000606596 710 ntBASIC26.11■■□□□ 1.77
COL6A6A6NMZ7 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
COL6A6A6NMZ7 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC26.09■■□□□ 1.77
COL6A6A6NMZ7 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC26.05■■□□□ 1.76
COL6A6A6NMZ7 AC087741.3-201ENST00000624270 1347 ntBASIC26.04■■□□□ 1.76
COL6A6A6NMZ7 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC26.04■■□□□ 1.76
COL6A6A6NMZ7 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
COL6A6A6NMZ7 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC26.02■■□□□ 1.76
COL6A6A6NMZ7 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC26■■□□□ 1.75
COL6A6A6NMZ7 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC25.99■■□□□ 1.75
COL6A6A6NMZ7 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
COL6A6A6NMZ7 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.98■■□□□ 1.75
COL6A6A6NMZ7 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
COL6A6A6NMZ7 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC25.97■■□□□ 1.75
COL6A6A6NMZ7 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC25.95■■□□□ 1.75
COL6A6A6NMZ7 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
COL6A6A6NMZ7 DUX4L28-201ENST00000623687 678 ntBASIC25.94■■□□□ 1.74
COL6A6A6NMZ7 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC25.94■■□□□ 1.74
COL6A6A6NMZ7 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
COL6A6A6NMZ7 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC25.92■■□□□ 1.74
COL6A6A6NMZ7 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC25.89■■□□□ 1.74
COL6A6A6NMZ7 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC25.89■■□□□ 1.74
COL6A6A6NMZ7 AL133380.1-201ENST00000506013 324 ntBASIC25.89■■□□□ 1.73
COL6A6A6NMZ7 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
COL6A6A6NMZ7 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL6A6A6NMZ7 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.86■■□□□ 1.73
COL6A6A6NMZ7 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL6A6A6NMZ7 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC25.85■■□□□ 1.73
COL6A6A6NMZ7 MIR4449-201ENST00000578365 66 ntBASIC25.85■■□□□ 1.73
COL6A6A6NMZ7 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.85■■□□□ 1.73
COL6A6A6NMZ7 EBPL-202ENST00000378268 680 ntTSL 3 BASIC25.83■■□□□ 1.73
COL6A6A6NMZ7 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
COL6A6A6NMZ7 CHML-205ENST00000638160 705 ntTSL 3 BASIC25.82■■□□□ 1.72
COL6A6A6NMZ7 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.81■■□□□ 1.72
COL6A6A6NMZ7 RPS2-202ENST00000526522 924 ntTSL 2 BASIC25.81■■□□□ 1.72
COL6A6A6NMZ7 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
COL6A6A6NMZ7 MVK-208ENST00000539696 608 ntTSL 5 BASIC25.8■■□□□ 1.72
COL6A6A6NMZ7 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC25.8■■□□□ 1.72
COL6A6A6NMZ7 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
COL6A6A6NMZ7 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC25.79■■□□□ 1.72
COL6A6A6NMZ7 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
COL6A6A6NMZ7 AC005559.1-201ENST00000589661 871 ntBASIC25.78■■□□□ 1.72
COL6A6A6NMZ7 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC25.76■■□□□ 1.71
COL6A6A6NMZ7 AC145285.7-201ENST00000614819 1539 ntBASIC25.76■■□□□ 1.71
COL6A6A6NMZ7 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC25.76■■□□□ 1.71
COL6A6A6NMZ7 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
COL6A6A6NMZ7 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
COL6A6A6NMZ7 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
COL6A6A6NMZ7 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
COL6A6A6NMZ7 BOD1-206ENST00000480951 814 ntTSL 2 BASIC25.75■■□□□ 1.71
COL6A6A6NMZ7 MIR762-201ENST00000390236 83 ntBASIC25.74■■□□□ 1.71
COL6A6A6NMZ7 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC25.73■■□□□ 1.71
COL6A6A6NMZ7 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
COL6A6A6NMZ7 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC25.7■■□□□ 1.7
COL6A6A6NMZ7 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL6A6A6NMZ7 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
COL6A6A6NMZ7 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL6A6A6NMZ7 HGH1-207ENST00000628266 258 ntTSL 5 BASIC25.66■■□□□ 1.7
COL6A6A6NMZ7 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC25.66■■□□□ 1.7
COL6A6A6NMZ7 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
COL6A6A6NMZ7 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
COL6A6A6NMZ7 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
COL6A6A6NMZ7 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC25.65■■□□□ 1.7
COL6A6A6NMZ7 ZNRF2P2-203ENST00000454624 420 ntBASIC25.63■■□□□ 1.69
COL6A6A6NMZ7 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC25.63■■□□□ 1.69
COL6A6A6NMZ7 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
COL6A6A6NMZ7 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
COL6A6A6NMZ7 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC25.62■■□□□ 1.69
COL6A6A6NMZ7 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
COL6A6A6NMZ7 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL6A6A6NMZ7 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
COL6A6A6NMZ7 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC25.59■■□□□ 1.69
COL6A6A6NMZ7 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL6A6A6NMZ7 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
COL6A6A6NMZ7 HSD17B1P1-201ENST00000590052 955 ntBASIC25.58■■□□□ 1.69
COL6A6A6NMZ7 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC25.58■■□□□ 1.69
COL6A6A6NMZ7 CALM3-209ENST00000597743 577 ntTSL 4 BASIC25.56■■□□□ 1.68
COL6A6A6NMZ7 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC25.54■■□□□ 1.68
COL6A6A6NMZ7 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
COL6A6A6NMZ7 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC25.54■■□□□ 1.68
COL6A6A6NMZ7 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.53■■□□□ 1.68
COL6A6A6NMZ7 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
COL6A6A6NMZ7 MIR639-201ENST00000384974 98 ntBASIC25.53■■□□□ 1.68
COL6A6A6NMZ7 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC25.51■■□□□ 1.67
COL6A6A6NMZ7 DENR-202ENST00000455982 1052 ntTSL 5 BASIC25.5■■□□□ 1.67
COL6A6A6NMZ7 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.48■■□□□ 1.67
COL6A6A6NMZ7 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC25.47■■□□□ 1.67
COL6A6A6NMZ7 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
COL6A6A6NMZ7 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC25.44■■□□□ 1.66
COL6A6A6NMZ7 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
COL6A6A6NMZ7 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
COL6A6A6NMZ7 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
COL6A6A6NMZ7 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC25.43■■□□□ 1.66
COL6A6A6NMZ7 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
COL6A6A6NMZ7 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC25.4■■□□□ 1.66
COL6A6A6NMZ7 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.66
COL6A6A6NMZ7 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
COL6A6A6NMZ7 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC25.38■■□□□ 1.65
COL6A6A6NMZ7 ILK-212ENST00000532063 1617 ntTSL 2 BASIC25.37■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms