Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC32.38■■■□□ 2.77
SMCHD1A6NHR9 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC32.36■■■□□ 2.77
SMCHD1A6NHR9 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
SMCHD1A6NHR9 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC32.35■■■□□ 2.77
SMCHD1A6NHR9 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC32.34■■■□□ 2.77
SMCHD1A6NHR9 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC32.33■■■□□ 2.77
SMCHD1A6NHR9 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC32.3■■■□□ 2.76
SMCHD1A6NHR9 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
SMCHD1A6NHR9 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
SMCHD1A6NHR9 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC32.24■■■□□ 2.75
SMCHD1A6NHR9 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
SMCHD1A6NHR9 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC32.24■■■□□ 2.75
SMCHD1A6NHR9 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
SMCHD1A6NHR9 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC32.2■■■□□ 2.75
SMCHD1A6NHR9 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC32.19■■■□□ 2.74
SMCHD1A6NHR9 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC32.19■■■□□ 2.74
SMCHD1A6NHR9 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
SMCHD1A6NHR9 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
SMCHD1A6NHR9 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC32.18■■■□□ 2.74
SMCHD1A6NHR9 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
SMCHD1A6NHR9 AL133380.1-201ENST00000506013 324 ntBASIC32.14■■■□□ 2.74
SMCHD1A6NHR9 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC32.13■■■□□ 2.73
SMCHD1A6NHR9 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
SMCHD1A6NHR9 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC32.09■■■□□ 2.73
SMCHD1A6NHR9 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SMCHD1A6NHR9 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
SMCHD1A6NHR9 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
SMCHD1A6NHR9 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC32.05■■■□□ 2.72
SMCHD1A6NHR9 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
SMCHD1A6NHR9 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC32.04■■■□□ 2.72
SMCHD1A6NHR9 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
SMCHD1A6NHR9 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC32.02■■■□□ 2.72
SMCHD1A6NHR9 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
SMCHD1A6NHR9 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
SMCHD1A6NHR9 CAHM-201ENST00000604200 896 ntBASIC31.99■■■□□ 2.71
SMCHD1A6NHR9 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
SMCHD1A6NHR9 AL162393.1-201ENST00000437852 946 ntBASIC31.99■■■□□ 2.71
SMCHD1A6NHR9 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SMCHD1A6NHR9 AL391121.1-201ENST00000607967 1349 ntBASIC31.97■■■□□ 2.71
SMCHD1A6NHR9 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
SMCHD1A6NHR9 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
SMCHD1A6NHR9 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.95■■■□□ 2.7
SMCHD1A6NHR9 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.91■■■□□ 2.7
SMCHD1A6NHR9 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
SMCHD1A6NHR9 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.89■■■□□ 2.7
SMCHD1A6NHR9 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SMCHD1A6NHR9 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.87■■■□□ 2.69
SMCHD1A6NHR9 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.85■■■□□ 2.69
SMCHD1A6NHR9 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.84■■■□□ 2.69
SMCHD1A6NHR9 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
SMCHD1A6NHR9 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SMCHD1A6NHR9 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.82■■■□□ 2.68
SMCHD1A6NHR9 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.82■■■□□ 2.68
SMCHD1A6NHR9 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.81■■■□□ 2.68
SMCHD1A6NHR9 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SMCHD1A6NHR9 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
SMCHD1A6NHR9 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.77■■■□□ 2.68
SMCHD1A6NHR9 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
SMCHD1A6NHR9 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
SMCHD1A6NHR9 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
SMCHD1A6NHR9 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
SMCHD1A6NHR9 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31.73■■■□□ 2.67
SMCHD1A6NHR9 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SMCHD1A6NHR9 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.71■■■□□ 2.67
SMCHD1A6NHR9 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
SMCHD1A6NHR9 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
SMCHD1A6NHR9 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.71■■■□□ 2.67
SMCHD1A6NHR9 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
SMCHD1A6NHR9 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.69■■■□□ 2.66
SMCHD1A6NHR9 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31.68■■■□□ 2.66
SMCHD1A6NHR9 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
SMCHD1A6NHR9 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.67■■■□□ 2.66
SMCHD1A6NHR9 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
SMCHD1A6NHR9 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC31.64■■■□□ 2.66
SMCHD1A6NHR9 AP006261.1-201ENST00000584783 668 ntBASIC31.64■■■□□ 2.66
SMCHD1A6NHR9 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.64■■■□□ 2.66
SMCHD1A6NHR9 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SMCHD1A6NHR9 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.62■■■□□ 2.65
SMCHD1A6NHR9 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
SMCHD1A6NHR9 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC31.61■■■□□ 2.65
SMCHD1A6NHR9 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
SMCHD1A6NHR9 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
SMCHD1A6NHR9 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
SMCHD1A6NHR9 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
SMCHD1A6NHR9 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.65
SMCHD1A6NHR9 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.56■■■□□ 2.64
SMCHD1A6NHR9 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.56■■■□□ 2.64
SMCHD1A6NHR9 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.56■■■□□ 2.64
SMCHD1A6NHR9 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31.56■■■□□ 2.64
SMCHD1A6NHR9 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.56■■■□□ 2.64
SMCHD1A6NHR9 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
SMCHD1A6NHR9 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.53■■■□□ 2.64
SMCHD1A6NHR9 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC31.52■■■□□ 2.64
SMCHD1A6NHR9 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.52■■■□□ 2.64
SMCHD1A6NHR9 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SMCHD1A6NHR9 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.51■■■□□ 2.64
SMCHD1A6NHR9 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
SMCHD1A6NHR9 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
SMCHD1A6NHR9 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
SMCHD1A6NHR9 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms