Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC39.71■■■■□ 3.95
SMCHD1A6NHR9 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC38.68■■■■□ 3.78
SMCHD1A6NHR9 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC38.63■■■■□ 3.77
SMCHD1A6NHR9 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC38.58■■■■□ 3.77
SMCHD1A6NHR9 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC38.52■■■■□ 3.76
SMCHD1A6NHR9 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC38.42■■■■□ 3.74
SMCHD1A6NHR9 AL356512.1-201ENST00000607453 1739 ntBASIC38.41■■■■□ 3.74
SMCHD1A6NHR9 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC38.26■■■■□ 3.71
SMCHD1A6NHR9 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC37.46■■■■□ 3.59
SMCHD1A6NHR9 HES6-203ENST00000409160 1600 ntTSL 2 BASIC37.36■■■■□ 3.57
SMCHD1A6NHR9 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC37.23■■■■□ 3.55
SMCHD1A6NHR9 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC37.16■■■■□ 3.54
SMCHD1A6NHR9 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC37.13■■■■□ 3.53
SMCHD1A6NHR9 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC37.06■■■■□ 3.52
SMCHD1A6NHR9 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC37.05■■■■□ 3.52
SMCHD1A6NHR9 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC36.9■■■■□ 3.5
SMCHD1A6NHR9 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC36.85■■■■□ 3.49
SMCHD1A6NHR9 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC36.83■■■■□ 3.49
SMCHD1A6NHR9 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC36.82■■■■□ 3.48
SMCHD1A6NHR9 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC36.82■■■■□ 3.48
SMCHD1A6NHR9 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC36.69■■■■□ 3.46
SMCHD1A6NHR9 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC36.51■■■■□ 3.44
SMCHD1A6NHR9 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC36.44■■■■□ 3.42
SMCHD1A6NHR9 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC36.34■■■■□ 3.41
SMCHD1A6NHR9 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC36.33■■■■□ 3.41
SMCHD1A6NHR9 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC35.97■■■■□ 3.35
SMCHD1A6NHR9 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC35.97■■■■□ 3.35
SMCHD1A6NHR9 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.32
SMCHD1A6NHR9 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC35.81■■■■□ 3.32
SMCHD1A6NHR9 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC35.74■■■■□ 3.31
SMCHD1A6NHR9 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC35.72■■■■□ 3.31
SMCHD1A6NHR9 INO80B-203ENST00000409917 796 ntTSL 2 BASIC35.7■■■■□ 3.31
SMCHD1A6NHR9 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC35.69■■■■□ 3.3
SMCHD1A6NHR9 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC35.63■■■■□ 3.29
SMCHD1A6NHR9 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC35.62■■■■□ 3.29
SMCHD1A6NHR9 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC35.62■■■■□ 3.29
SMCHD1A6NHR9 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC35.59■■■■□ 3.29
SMCHD1A6NHR9 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC35.58■■■■□ 3.29
SMCHD1A6NHR9 AC006077.2-201ENST00000623591 457 ntBASIC35.35■■■■□ 3.25
SMCHD1A6NHR9 AC015813.7-201ENST00000623294 581 ntBASIC35.31■■■■□ 3.24
SMCHD1A6NHR9 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
SMCHD1A6NHR9 ZNRF2P1-201ENST00000441407 443 ntBASIC35.22■■■■□ 3.23
SMCHD1A6NHR9 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC35.18■■■■□ 3.22
SMCHD1A6NHR9 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC35.16■■■■□ 3.22
SMCHD1A6NHR9 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC35.13■■■■□ 3.21
SMCHD1A6NHR9 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC35.1■■■■□ 3.21
SMCHD1A6NHR9 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC35■■■■□ 3.19
SMCHD1A6NHR9 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC34.95■■■■□ 3.19
SMCHD1A6NHR9 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
SMCHD1A6NHR9 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
SMCHD1A6NHR9 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC34.81■■■■□ 3.16
SMCHD1A6NHR9 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC34.78■■■■□ 3.16
SMCHD1A6NHR9 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC34.74■■■■□ 3.15
SMCHD1A6NHR9 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC34.72■■■■□ 3.15
SMCHD1A6NHR9 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC34.72■■■■□ 3.15
SMCHD1A6NHR9 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC34.71■■■■□ 3.15
SMCHD1A6NHR9 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC34.67■■■■□ 3.14
SMCHD1A6NHR9 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC34.57■■■■□ 3.12
SMCHD1A6NHR9 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
SMCHD1A6NHR9 AP002365.1-201ENST00000603448 772 ntBASIC34.54■■■■□ 3.12
SMCHD1A6NHR9 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC34.47■■■■□ 3.11
SMCHD1A6NHR9 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC34.43■■■■□ 3.1
SMCHD1A6NHR9 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
SMCHD1A6NHR9 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC34.33■■■■□ 3.09
SMCHD1A6NHR9 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC34.32■■■■□ 3.08
SMCHD1A6NHR9 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
SMCHD1A6NHR9 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC34.18■■■■□ 3.06
SMCHD1A6NHR9 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC34.16■■■■□ 3.06
SMCHD1A6NHR9 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
SMCHD1A6NHR9 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC34.15■■■■□ 3.06
SMCHD1A6NHR9 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
SMCHD1A6NHR9 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC34.11■■■■□ 3.05
SMCHD1A6NHR9 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
SMCHD1A6NHR9 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC34.09■■■■□ 3.05
SMCHD1A6NHR9 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC34.08■■■■□ 3.05
SMCHD1A6NHR9 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC34.06■■■■□ 3.04
SMCHD1A6NHR9 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC34.06■■■■□ 3.04
SMCHD1A6NHR9 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
SMCHD1A6NHR9 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC34.03■■■■□ 3.04
SMCHD1A6NHR9 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC34.03■■■■□ 3.04
SMCHD1A6NHR9 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
SMCHD1A6NHR9 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC34.01■■■■□ 3.03
SMCHD1A6NHR9 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC33.98■■■■□ 3.03
SMCHD1A6NHR9 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC33.98■■■■□ 3.03
SMCHD1A6NHR9 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
SMCHD1A6NHR9 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC33.89■■■■□ 3.02
SMCHD1A6NHR9 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC33.84■■■■□ 3.01
SMCHD1A6NHR9 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
SMCHD1A6NHR9 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC33.82■■■■□ 3
SMCHD1A6NHR9 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC33.82■■■■□ 3
SMCHD1A6NHR9 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC33.8■■■■□ 3
SMCHD1A6NHR9 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC33.77■■■■□ 3
SMCHD1A6NHR9 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC33.7■■■□□ 2.99
SMCHD1A6NHR9 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SMCHD1A6NHR9 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SMCHD1A6NHR9 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
SMCHD1A6NHR9 DYNLL1-208ENST00000550178 581 ntBASIC33.68■■■□□ 2.98
SMCHD1A6NHR9 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC33.66■■■□□ 2.98
SMCHD1A6NHR9 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC33.66■■■□□ 2.98
SMCHD1A6NHR9 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC33.65■■■□□ 2.98
Retrieved 100 of 98,524 protein–RNA pairs in 8.5 ms