Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 UFM1-202ENST00000379649 846 ntTSL 4 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 NDUFS6P1-201ENST00000485187 316 ntBASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 PRKXP1-201ENST00000561423 1122 ntBASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 AC016629.1-201ENST00000596579 586 ntBASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 AC084346.2-201ENST00000607097 949 ntBASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 AC011474.4-201ENST00000623523 2076 ntBASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 BEND3P1-201ENST00000421591 1944 ntBASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 AC004554.1-201ENST00000422830 1468 ntBASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 AC092053.3-201ENST00000641308 4975 ntBASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 AL627422.1-201ENST00000434104 580 ntBASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 CHCHD2P9-201ENST00000461726 456 ntBASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 MIR4522-201ENST00000584932 87 ntBASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 AC005632.3-201ENST00000605544 308 ntBASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 KRT8P43-201ENST00000406052 1458 ntBASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TRIM39Q9HCM9 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 API5-208ENST00000531273 1868 ntTSL 2 BASIC13.91□□□□□ -0.18
TRIM39Q9HCM9 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms