Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC3P19447 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC3P19447 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
ERCC3P19447 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
ERCC3P19447 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
ERCC3P19447 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC3P19447 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
ERCC3P19447 AC067750.1-201ENST00000608826 6545 ntBASIC16.24■□□□□ 0.19
ERCC3P19447 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
ERCC3P19447 PID1-202ENST00000392054 2745 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC3P19447 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC3P19447 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
ERCC3P19447 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC3P19447 ACTG1P19-201ENST00000418987 1116 ntBASIC16.24■□□□□ 0.19
ERCC3P19447 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC3P19447 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC3P19447 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC3P19447 IGHV1-12-201ENST00000518307 205 ntBASIC16.24■□□□□ 0.19
ERCC3P19447 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC16.24■□□□□ 0.19
ERCC3P19447 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC16.24■□□□□ 0.19
ERCC3P19447 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
ERCC3P19447 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC16.24■□□□□ 0.19
ERCC3P19447 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
ERCC3P19447 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 KRT8P18-201ENST00000413425 1445 ntBASIC16.24■□□□□ 0.19
ERCC3P19447 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC3P19447 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 AC011498.7-201ENST00000624986 2027 ntBASIC16.24■□□□□ 0.19
ERCC3P19447 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC3P19447 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC3P19447 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 MSANTD2P1-201ENST00000445341 1368 ntBASIC16.24■□□□□ 0.19
ERCC3P19447 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC16.24■□□□□ 0.19
ERCC3P19447 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC3P19447 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
ERCC3P19447 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
ERCC3P19447 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
ERCC3P19447 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC16.23■□□□□ 0.19
ERCC3P19447 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC16.23■□□□□ 0.19
ERCC3P19447 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 NHP2-202ENST00000314397 599 ntTSL 2 BASIC16.23■□□□□ 0.19
ERCC3P19447 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
ERCC3P19447 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC16.23■□□□□ 0.19
ERCC3P19447 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC16.23■□□□□ 0.19
ERCC3P19447 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 TPT1P11-201ENST00000458482 498 ntBASIC16.23■□□□□ 0.19
ERCC3P19447 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 CMC2-204ENST00000562713 573 ntTSL 3 BASIC16.23■□□□□ 0.19
ERCC3P19447 CMC2-209ENST00000565108 399 ntTSL 2 BASIC16.23■□□□□ 0.19
ERCC3P19447 SNORD3B-1-201ENST00000577988 758 ntBASIC16.23■□□□□ 0.19
ERCC3P19447 AP005264.5-201ENST00000590066 467 ntBASIC16.23■□□□□ 0.19
ERCC3P19447 AC244250.3-201ENST00000620749 366 ntBASIC16.23■□□□□ 0.19
ERCC3P19447 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
ERCC3P19447 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC16.23■□□□□ 0.19
ERCC3P19447 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
ERCC3P19447 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
ERCC3P19447 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC16.23■□□□□ 0.19
ERCC3P19447 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC16.23■□□□□ 0.19
ERCC3P19447 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
ERCC3P19447 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
ERCC3P19447 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC16.23■□□□□ 0.19
ERCC3P19447 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
ERCC3P19447 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC3P19447 AC019109.1-201ENST00000401725 1874 ntBASIC16.22■□□□□ 0.19
ERCC3P19447 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
ERCC3P19447 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC3P19447 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC3P19447 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms