Protein–RNA interactions for Protein: P56880

CLDN20, Claudin-20, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN20P56880 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC13.03□□□□□ -0.32
CLDN20P56880 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.03□□□□□ -0.32
CLDN20P56880 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC13.03□□□□□ -0.32
CLDN20P56880 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC13.03□□□□□ -0.32
CLDN20P56880 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC13.03□□□□□ -0.32
CLDN20P56880 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.03□□□□□ -0.32
CLDN20P56880 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.03□□□□□ -0.32
CLDN20P56880 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC13.03□□□□□ -0.32
CLDN20P56880 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC13.03□□□□□ -0.32
CLDN20P56880 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CLDN20P56880 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.03□□□□□ -0.32
CLDN20P56880 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CLDN20P56880 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC13.03□□□□□ -0.32
CLDN20P56880 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CLDN20P56880 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.03□□□□□ -0.32
CLDN20P56880 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLDN20P56880 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLDN20P56880 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.32
CLDN20P56880 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLDN20P56880 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLDN20P56880 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
CLDN20P56880 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLDN20P56880 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLDN20P56880 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLDN20P56880 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC13.02□□□□□ -0.32
CLDN20P56880 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.02□□□□□ -0.32
CLDN20P56880 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
CLDN20P56880 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.02□□□□□ -0.32
CLDN20P56880 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
CLDN20P56880 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
CLDN20P56880 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.02□□□□□ -0.33
CLDN20P56880 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC13.02□□□□□ -0.33
CLDN20P56880 CMC1-204ENST00000423894 549 ntTSL 2 BASIC13.02□□□□□ -0.33
CLDN20P56880 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC13.02□□□□□ -0.33
CLDN20P56880 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.02□□□□□ -0.33
CLDN20P56880 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC13.02□□□□□ -0.33
CLDN20P56880 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
CLDN20P56880 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.02□□□□□ -0.33
CLDN20P56880 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
CLDN20P56880 NAP1L6-202ENST00000641404 1222 ntBASIC13.02□□□□□ -0.33
CLDN20P56880 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
CLDN20P56880 AHCYP4-201ENST00000419201 1315 ntBASIC13.02□□□□□ -0.33
CLDN20P56880 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC13.02□□□□□ -0.33
CLDN20P56880 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 KRT8P21-201ENST00000430398 1491 ntBASIC13.02□□□□□ -0.33
CLDN20P56880 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.02□□□□□ -0.33
CLDN20P56880 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
CLDN20P56880 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC13.02□□□□□ -0.33
CLDN20P56880 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
CLDN20P56880 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC13.02□□□□□ -0.33
CLDN20P56880 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLDN20P56880 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLDN20P56880 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLDN20P56880 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.01□□□□□ -0.33
CLDN20P56880 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLDN20P56880 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
CLDN20P56880 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLDN20P56880 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLDN20P56880 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC13.01□□□□□ -0.33
CLDN20P56880 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC13.01□□□□□ -0.33
CLDN20P56880 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CLDN20P56880 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CLDN20P56880 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLDN20P56880 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLDN20P56880 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.01□□□□□ -0.33
CLDN20P56880 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLDN20P56880 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC13.01□□□□□ -0.33
CLDN20P56880 IGHJ2P-201ENST00000454480 60 ntBASIC13.01□□□□□ -0.33
CLDN20P56880 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC13.01□□□□□ -0.33
CLDN20P56880 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms