RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 NISCHQ9Y2I1 1504 aa36.21■■■■□ 3.39
SMARCE1-216ENST00000580419 CCDC180Q9P1Z9 1646 aa32.51■■■□□ 2.79
SMARCE1-216ENST00000580419 ABCC9O60706 1549 aa32.01■■■□□ 2.72
SMARCE1-216ENST00000580419 RB1CC1Q8TDY2 1594 aa30.77■■■□□ 2.52
SMARCE1-216ENST00000580419 NACADO15069 1562 aa30.67■■■□□ 2.5
SMARCE1-216ENST00000580419 MYO15BQ96JP2 1530 aa30.47■■■□□ 2.47
SMARCE1-216ENST00000580419 DCAF8L2P0C7V8 631 aa30.15■■■□□ 2.42
SMARCE1-216ENST00000580419 DCAF1Q9Y4B6 1507 aa30.1■■■□□ 2.41
SMARCE1-216ENST00000580419 ZCCHC6Q5VYS8 1495 aaKnown RBP30.06■■■□□ 2.4
SMARCE1-216ENST00000580419 UNC13AQ9UPW8 1703 aa30.02■■■□□ 2.4
SMARCE1-216ENST00000580419 DNAJC5BQ9UF47 199 aa29.84■■■□□ 2.37
SMARCE1-216ENST00000580419 BICRAQ9NZM4 1560 aa29.82■■■□□ 2.36
SMARCE1-216ENST00000580419 PABPN1Q86U42 306 aaKnown RBP eCLIP29.77■■■□□ 2.36
SMARCE1-216ENST00000580419 SHROOM4Q9ULL8 1493 aa29.7■■■□□ 2.35
SMARCE1-216ENST00000580419 SCRIBQ14160 1630 aa29.36■■■□□ 2.29
SMARCE1-216ENST00000580419 EIF4G1Q04637 1599 aaKnown RBP29.07■■■□□ 2.24
SMARCE1-216ENST00000580419 CC2D2AQ9P2K1 1620 aa29.04■■■□□ 2.24
SMARCE1-216ENST00000580419 CECR2Q9BXF3 1484 aa28.91■■■□□ 2.22
SMARCE1-216ENST00000580419 NCAPD3P42695 1498 aa28.31■■■□□ 2.12
SMARCE1-216ENST00000580419 SMARCA4P51532 1647 aa28.18■■■□□ 2.1
SMARCE1-216ENST00000580419 SMARCA2P51531 1590 aa28.16■■■□□ 2.1
SMARCE1-216ENST00000580419 ATAD2BQ9ULI0 1458 aa28.16■■■□□ 2.1
SMARCE1-216ENST00000580419 BAZ1AQ9NRL2 1556 aaPredicted RBP28.12■■■□□ 2.09
SMARCE1-216ENST00000580419 HMGXB3Q12766 1538 aa28.12■■■□□ 2.09
SMARCE1-216ENST00000580419 PEG3Q9GZU2 1588 aa28.05■■■□□ 2.08
SMARCE1-216ENST00000580419 BAZ1BQ9UIG0 1483 aaKnown RBP27.87■■■□□ 2.05
SMARCE1-216ENST00000580419 MROH2BQ7Z745 1585 aa27.81■■■□□ 2.04
SMARCE1-216ENST00000580419 CUX2O14529 1486 aa27.74■■■□□ 2.03
SMARCE1-216ENST00000580419 ERCC6Q03468 1493 aa27.68■■■□□ 2.02
SMARCE1-216ENST00000580419 LAMC3Q9Y6N6 1575 aa27.62■■■□□ 2.01
SMARCE1-216ENST00000580419 NESP48681 1621 aa27.56■■■□□ 2
SMARCE1-216ENST00000580419 WIZO95785 1651 aa27.45■■□□□ 1.98
SMARCE1-216ENST00000580419 PDS5BQ9NTI5 1447 aa27.42■■□□□ 1.98
SMARCE1-216ENST00000580419 DNAJC5Q9H3Z4 198 aa27.41■■□□□ 1.98
SMARCE1-216ENST00000580419 CADPSQ9ULU8 1353 aa27.39■■□□□ 1.98
SMARCE1-216ENST00000580419 THOC2Q8NI27 1593 aaKnown RBP27.37■■□□□ 1.97
SMARCE1-216ENST00000580419 RSF1Q96T23 1441 aaPredicted RBP27.35■■□□□ 1.97
SMARCE1-216ENST00000580419 KIF21AQ7Z4S6 1674 aa27.28■■□□□ 1.96
SMARCE1-216ENST00000580419 TOP2AP11388 1531 aaKnown RBP27.23■■□□□ 1.95
SMARCE1-216ENST00000580419 CFTRP13569 1480 aa27.15■■□□□ 1.94
SMARCE1-216ENST00000580419 MRC2Q9UBG0 1479 aa27.13■■□□□ 1.93
SMARCE1-216ENST00000580419 WDR62O43379 1518 aa27.1■■□□□ 1.93
SMARCE1-216ENST00000580419 CEP164Q9UPV0 1460 aa27.05■■□□□ 1.92
SMARCE1-216ENST00000580419 FANCD2Q9BXW9 1451 aa27.02■■□□□ 1.92
SMARCE1-216ENST00000580419 PRDM2Q13029 1718 aa26.93■■□□□ 1.9
SMARCE1-216ENST00000580419 CCDC88BA6NC98 1476 aa26.86■■□□□ 1.89
SMARCE1-216ENST00000580419 URB2Q14146 1524 aaKnown RBP26.76■■□□□ 1.87
SMARCE1-216ENST00000580419 ABCC8Q09428 1581 aa26.66■■□□□ 1.86
SMARCE1-216ENST00000580419 IFT140Q96RY7 1462 aa26.55■■□□□ 1.84
SMARCE1-216ENST00000580419 TOPBP1Q92547 1522 aa26.55■■□□□ 1.84
SMARCE1-216ENST00000580419 DNMBPQ6XZF7 1577 aa26.5■■□□□ 1.83
SMARCE1-216ENST00000580419 OSCARQ8IYS5 282 aa26.42■■□□□ 1.82
SMARCE1-216ENST00000580419 ZNF608Q9ULD9 1512 aaPredicted RBP26.34■■□□□ 1.81
SMARCE1-216ENST00000580419 TARBP1Q13395 1621 aaKnown RBP26.33■■□□□ 1.81
SMARCE1-216ENST00000580419 POLA1P09884 1462 aaPredicted RBP26.29■■□□□ 1.8
SMARCE1-216ENST00000580419 EIF4G3O43432 1585 aaKnown RBP26.27■■□□□ 1.8
SMARCE1-216ENST00000580419 WDR97A6NE52 1622 aa26.25■■□□□ 1.79
SMARCE1-216ENST00000580419 SOGA1O94964 1423 aa26.15■■□□□ 1.78
SMARCE1-216ENST00000580419 AQRO60306 1485 aaKnown RBP eCLIP26.13■■□□□ 1.775e-8■■■□□ 18.8
SMARCE1-216ENST00000580419 CUX1P39880 1505 aa26.13■■□□□ 1.77
SMARCE1-216ENST00000580419 FGD5Q6ZNL6 1462 aa26.11■■□□□ 1.77
SMARCE1-216ENST00000580419 RAD54L2Q9Y4B4 1467 aa26.07■■□□□ 1.76
SMARCE1-216ENST00000580419 SUPT5HO00267 1087 aaKnown RBP26.05■■□□□ 1.76
SMARCE1-216ENST00000580419 TRIM41Q8WV44 630 aa26.02■■□□□ 1.76
SMARCE1-216ENST00000580419 CHD1O14646 1710 aa26.02■■□□□ 1.76
SMARCE1-216ENST00000580419 RIMBP3CA6NJZ7 1639 aa25.99■■□□□ 1.75
SMARCE1-216ENST00000580419 RIMBP3BA6NNM3 1639 aa25.99■■□□□ 1.75
SMARCE1-216ENST00000580419 RIMBP3Q9UFD9 1639 aa25.99■■□□□ 1.75
SMARCE1-216ENST00000580419 TDRD9Q8NDG6 1382 aaKnown RBP25.99■■□□□ 1.75
SMARCE1-216ENST00000580419 MAGI1Q96QZ7 1491 aaPredicted RBP25.98■■□□□ 1.75
SMARCE1-216ENST00000580419 ARHGEF11O15085 1522 aa25.96■■□□□ 1.75
SMARCE1-216ENST00000580419 GRIN2BQ13224 1484 aa25.96■■□□□ 1.75
SMARCE1-216ENST00000580419 ABCA10Q8WWZ4 1543 aa25.93■■□□□ 1.74
SMARCE1-216ENST00000580419 SNAPC4Q5SXM2 1469 aa25.9■■□□□ 1.74
SMARCE1-216ENST00000580419 GAPVD1Q14C86 1478 aa25.86■■□□□ 1.73
SMARCE1-216ENST00000580419 SYNJ2O15056 1496 aa25.85■■□□□ 1.73
SMARCE1-216ENST00000580419 BIVM-ERCC5R4GMW8 1640 aa25.85■■□□□ 1.73
SMARCE1-216ENST00000580419 TOP2BQ02880 1626 aa25.85■■□□□ 1.73
SMARCE1-216ENST00000580419 ABCA5Q8WWZ7 1642 aa25.85■■□□□ 1.73
SMARCE1-216ENST00000580419 WRNQ14191 1432 aaPredicted RBP eCLIP25.84■■□□□ 1.73
SMARCE1-216ENST00000580419 FBLN2P98095 1184 aa25.82■■□□□ 1.72
SMARCE1-216ENST00000580419 SYNJ1O43426 1573 aa25.82■■□□□ 1.72
SMARCE1-216ENST00000580419 PBRM1Q86U86 1689 aa25.81■■□□□ 1.72
SMARCE1-216ENST00000580419 CLASP1Q7Z460 1538 aa25.81■■□□□ 1.72
SMARCE1-216ENST00000580419 CHMP7Q8WUX9 453 aaPredicted RBP25.8■■□□□ 1.72
SMARCE1-216ENST00000580419 ARAP1Q96P48 1450 aa25.7■■□□□ 1.7
SMARCE1-216ENST00000580419 CYB5RLQ6IPT4 315 aa25.66■■□□□ 1.7
SMARCE1-216ENST00000580419 ERICH3Q5RHP9 1530 aa25.63■■□□□ 1.69
SMARCE1-216ENST00000580419 AEBP2Q6ZN18 517 aaPredicted RBP25.61■■□□□ 1.69
SMARCE1-216ENST00000580419 GRIN2AQ12879 1464 aa25.6■■□□□ 1.69
SMARCE1-216ENST00000580419 ADAMTS12P58397 1594 aa25.6■■□□□ 1.69
SMARCE1-216ENST00000580419 FHAD1B1AJZ9 1412 aa25.58■■□□□ 1.69
SMARCE1-216ENST00000580419 NUP160Q12769 1436 aa25.56■■□□□ 1.68
SMARCE1-216ENST00000580419 CEP170Q5SW79 1584 aa25.45■■□□□ 1.66
SMARCE1-216ENST00000580419 SHROOM2Q13796 1616 aa25.44■■□□□ 1.66
SMARCE1-216ENST00000580419 KIF27Q86VH2 1401 aa25.33■■□□□ 1.65
SMARCE1-216ENST00000580419 CUL7Q14999 1698 aa25.29■■□□□ 1.64
SMARCE1-216ENST00000580419 IGF1RP08069 1367 aa25.28■■□□□ 1.64
SMARCE1-216ENST00000580419 ERCC6L2Q5T890 1561 aa25.26■■□□□ 1.63
SMARCE1-216ENST00000580419 TRHP20396 242 aaPredicted RBP25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms