RNA–Protein interactions for RNA: ENST00000371429.3

NDC1-201, Transcript of NDC1 transmembrane nucleoporin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDC1, Length 5,134 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDC1-201ENST00000371429 DCAF8L2P0C7V8 631 aa26.49■■□□□ 1.83
NDC1-201ENST00000371429 NISCHQ9Y2I1 1504 aa25.43■■□□□ 1.66
NDC1-201ENST00000371429 SUPT5HO00267 1087 aaKnown RBP24.71■■□□□ 1.55
NDC1-201ENST00000371429 SHROOM4Q9ULL8 1493 aa24.43■■□□□ 1.5
NDC1-201ENST00000371429 EHMT2Q96KQ7 1210 aa23.84■■□□□ 1.41
NDC1-201ENST00000371429 APLP2Q06481 763 aa23.43■■□□□ 1.34
NDC1-201ENST00000371429 FAM9AQ8IZU1 332 aaPredicted RBP23.33■■□□□ 1.33
NDC1-201ENST00000371429 RANGAP1P46060 587 aaPredicted RBP22.98■■□□□ 1.27
NDC1-201ENST00000371429 TTBK1Q5TCY1 1321 aaPredicted RBP22.94■■□□□ 1.26
NDC1-201ENST00000371429 TRIM41Q8WV44 630 aa22.94■■□□□ 1.26
NDC1-201ENST00000371429 ATP1B4Q9UN42 357 aaPredicted RBP22.82■■□□□ 1.24
NDC1-201ENST00000371429 UBTFP17480 764 aaKnown RBP22.7■■□□□ 1.22
NDC1-201ENST00000371429 PCGF6Q9BYE7 350 aa22.52■■□□□ 1.2
NDC1-201ENST00000371429 PELP1Q8IZL8 1130 aaKnown RBP22.4■■□□□ 1.18
NDC1-201ENST00000371429 ABCC9O60706 1549 aa22.31■■□□□ 1.16
NDC1-201ENST00000371429 CCER1Q8TC90 406 aaPredicted RBP22.27■■□□□ 1.15
NDC1-201ENST00000371429 PABPN1Q86U42 306 aaKnown RBP eCLIP22.18■■□□□ 1.14
NDC1-201ENST00000371429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.16■■□□□ 1.14
NDC1-201ENST00000371429 HNRNPUL2Q1KMD3 747 aaKnown RBP22.16■■□□□ 1.14
NDC1-201ENST00000371429 MYT1LQ9UL68 1186 aa22.08■■□□□ 1.13
NDC1-201ENST00000371429 ZEB1P37275 1124 aaPredicted RBP22.07■■□□□ 1.12
NDC1-201ENST00000371429 PPARGC1BQ86YN6 1023 aaKnown RBP22.05■■□□□ 1.12
NDC1-201ENST00000371429 ITGAEP38570 1179 aa21.88■■□□□ 1.09
NDC1-201ENST00000371429 CHIC1Q5VXU3 224 aa21.79■■□□□ 1.08
NDC1-201ENST00000371429 CENPBP07199 599 aaPredicted RBP21.77■■□□□ 1.08
NDC1-201ENST00000371429 LOC105371045A0A1W2PR82 267 aa21.74■■□□□ 1.07
NDC1-201ENST00000371429 TRIM26Q12899 539 aaPredicted RBP21.66■■□□□ 1.06
NDC1-201ENST00000371429 POLR3GLQ9BT43 218 aa21.56■■□□□ 1.04
NDC1-201ENST00000371429 FBLN2P98095 1184 aa21.56■■□□□ 1.04
NDC1-201ENST00000371429 NEFLP07196 543 aa21.5■■□□□ 1.03
NDC1-201ENST00000371429 YTHDC1Q96MU7 727 aaKnown RBP21.48■■□□□ 1.03
NDC1-201ENST00000371429 ERICH6Q7L0X2 663 aa21.39■■□□□ 1.02
NDC1-201ENST00000371429 FAM50AQ14320 339 aaKnown RBP21.39■■□□□ 1.01
NDC1-201ENST00000371429 CNGB1Q14028 1251 aaPredicted RBP21.3■■□□□ 1
NDC1-201ENST00000371429 SLC4A1APQ9BWU0 796 aaKnown RBP21.29■■□□□ 1
NDC1-201ENST00000371429 TRIM52Q96A61 297 aa21.26■□□□□ 0.99
NDC1-201ENST00000371429 SCRIBQ14160 1630 aa21.2■□□□□ 0.98
NDC1-201ENST00000371429 HRCP23327 699 aa21.14■□□□□ 0.97
NDC1-201ENST00000371429 P3H3Q8IVL6 736 aa21.12■□□□□ 0.97
NDC1-201ENST00000371429 ARID3CA6NKF2 412 aa21.1■□□□□ 0.97
NDC1-201ENST00000371429 CSRNP3Q8WYN3 585 aa21.07■□□□□ 0.96
NDC1-201ENST00000371429 NEUROD1Q13562 356 aa21.01■□□□□ 0.95
NDC1-201ENST00000371429 ZNF326Q5BKZ1 582 aaKnown RBP20.97■□□□□ 0.95
NDC1-201ENST00000371429 ZCCHC6Q5VYS8 1495 aaKnown RBP20.96■□□□□ 0.95
NDC1-201ENST00000371429 CDK11AQ9UQ88 783 aaPredicted RBP20.94■□□□□ 0.94
NDC1-201ENST00000371429 ZNF777Q9ULD5 760 aaPredicted RBP20.92■□□□□ 0.94
NDC1-201ENST00000371429 NPM1P06748 294 aaKnown RBP eCLIP20.87■□□□□ 0.93
NDC1-201ENST00000371429 BCANQ96GW7 911 aa20.86■□□□□ 0.93
NDC1-201ENST00000371429 CCDC180Q9P1Z9 1646 aa20.82■□□□□ 0.92
NDC1-201ENST00000371429 DAXXQ9UER7 740 aaPredicted RBP20.81■□□□□ 0.92
NDC1-201ENST00000371429 ESF1Q9H501 851 aaKnown RBP20.8■□□□□ 0.92
NDC1-201ENST00000371429 RB1CC1Q8TDY2 1594 aa20.74■□□□□ 0.91
NDC1-201ENST00000371429 DIEXFQ68CQ4 756 aaKnown RBP20.72■□□□□ 0.91
NDC1-201ENST00000371429 CHMP7Q8WUX9 453 aaPredicted RBP20.67■□□□□ 0.9
NDC1-201ENST00000371429 CLSPNQ9HAW4 1339 aa20.61■□□□□ 0.89
NDC1-201ENST00000371429 PLPPR3Q6T4P5 718 aa20.6■□□□□ 0.89
NDC1-201ENST00000371429 STAG3Q9UJ98 1225 aa20.59■□□□□ 0.89
NDC1-201ENST00000371429 ANP32CO43423 234 aa20.58■□□□□ 0.89
NDC1-201ENST00000371429 CHGAP10645 457 aaKnown RBP20.58■□□□□ 0.88
NDC1-201ENST00000371429 SLC24A1O60721 1099 aa20.54■□□□□ 0.88
NDC1-201ENST00000371429 NEFMP07197 916 aa20.51■□□□□ 0.87
NDC1-201ENST00000371429 NACADO15069 1562 aa20.47■□□□□ 0.87
NDC1-201ENST00000371429 TSPY4P0CV99 314 aa20.44■□□□□ 0.86
NDC1-201ENST00000371429 TSPY10P0CW01 314 aa20.44■□□□□ 0.86
NDC1-201ENST00000371429 CHIC2Q9UKJ5 165 aa20.43■□□□□ 0.86
NDC1-201ENST00000371429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.42■□□□□ 0.86
NDC1-201ENST00000371429 ZBTB47Q9UFB7 747 aaPredicted RBP20.4■□□□□ 0.86
NDC1-201ENST00000371429 MTUS2Q5JR59 1369 aa20.38■□□□□ 0.85
NDC1-201ENST00000371429 BAZ1BQ9UIG0 1483 aaKnown RBP20.37■□□□□ 0.85
NDC1-201ENST00000371429 ZNF316A6NFI3 1004 aaPredicted RBP20.37■□□□□ 0.85
NDC1-201ENST00000371429 TONSLQ96HA7 1378 aa20.35■□□□□ 0.85
NDC1-201ENST00000371429 KCNH8Q96L42 1107 aa20.33■□□□□ 0.85
NDC1-201ENST00000371429 RSF1Q96T23 1441 aaPredicted RBP20.33■□□□□ 0.85
NDC1-201ENST00000371429 CANXP27824 592 aaKnown RBP20.32■□□□□ 0.84
NDC1-201ENST00000371429 PLEKHD1A6NEE1 506 aa20.27■□□□□ 0.84
NDC1-201ENST00000371429 ERCC6Q03468 1493 aa20.27■□□□□ 0.84
NDC1-201ENST00000371429 BCL11AQ9H165 835 aa20.26■□□□□ 0.83
NDC1-201ENST00000371429 CLIP1P30622 1438 aa20.23■□□□□ 0.83
NDC1-201ENST00000371429 WRNQ14191 1432 aaPredicted RBP eCLIP20.21■□□□□ 0.83
NDC1-201ENST00000371429 KDM2AQ9Y2K7 1162 aa20.16■□□□□ 0.82
NDC1-201ENST00000371429 KIF27Q86VH2 1401 aa20.14■□□□□ 0.81
NDC1-201ENST00000371429 EEA1Q15075 1411 aa20.14■□□□□ 0.81
NDC1-201ENST00000371429 RRP7BPQ9NSQ0 103 aa20.1■□□□□ 0.81
NDC1-201ENST00000371429 ARID4BQ4LE39 1312 aaPredicted RBP20.08■□□□□ 0.81
NDC1-201ENST00000371429 RTL5Q5HYW3 569 aaPredicted RBP20.08■□□□□ 0.8
NDC1-201ENST00000371429 DCAF1Q9Y4B6 1507 aa20.07■□□□□ 0.8
NDC1-201ENST00000371429 BAZ1AQ9NRL2 1556 aaPredicted RBP20.07■□□□□ 0.8
NDC1-201ENST00000371429 PPP1R15AO75807 674 aaPredicted RBP20.07■□□□□ 0.8
NDC1-201ENST00000371429 GOLGA3Q08378 1498 aa20.06■□□□□ 0.8
NDC1-201ENST00000371429 CFDP1Q9UEE9 299 aaPredicted RBP20.05■□□□□ 0.8
NDC1-201ENST00000371429 SCAF1Q9H7N4 1312 aaKnown RBP20.03■□□□□ 0.8
NDC1-201ENST00000371429 SENP3Q9H4L4 574 aaPredicted RBP20.03■□□□□ 0.8
NDC1-201ENST00000371429 DDX10Q13206 875 aaKnown RBP20.02■□□□□ 0.8
NDC1-201ENST00000371429 CECR2Q9BXF3 1484 aa20■□□□□ 0.79
NDC1-201ENST00000371429 C14orf37Q86TY3 774 aa19.97■□□□□ 0.79
NDC1-201ENST00000371429 GTF3C3Q9Y5Q9 886 aa19.96■□□□□ 0.79
NDC1-201ENST00000371429 CEP162Q5TB80 1403 aa19.96■□□□□ 0.79
NDC1-201ENST00000371429 FAM9BQ8IZU0 186 aa19.95■□□□□ 0.78
NDC1-201ENST00000371429 TMC1Q8TDI8 760 aa19.94■□□□□ 0.78
NDC1-201ENST00000371429 RGL3Q3MIN7 710 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms