RNA–Protein interactions for RNA: ENST00000614616.4

CHD1-212, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CHD1, Length 8,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-212ENST00000614616 MYT1Q01538 1121 aa22.83■■□□□ 1.25
CHD1-212ENST00000614616 PELP1Q8IZL8 1130 aaKnown RBP22.77■■□□□ 1.24
CHD1-212ENST00000614616 CENPBP07199 599 aaPredicted RBP21.69■■□□□ 1.06
CHD1-212ENST00000614616 ERICH6Q7L0X2 663 aa21.63■■□□□ 1.05
CHD1-212ENST00000614616 CCER1Q8TC90 406 aaPredicted RBP21.54■■□□□ 1.04
CHD1-212ENST00000614616 ZEB1P37275 1124 aaPredicted RBP21.42■■□□□ 1.02
CHD1-212ENST00000614616 SUPT5HO00267 1087 aaKnown RBP21.37■■□□□ 1.01
CHD1-212ENST00000614616 DCAF8L2P0C7V8 631 aa21.33■■□□□ 1.01
CHD1-212ENST00000614616 PCGF6Q9BYE7 350 aa21.29■■□□□ 1
CHD1-212ENST00000614616 TTBK1Q5TCY1 1321 aaPredicted RBP21.14■□□□□ 0.98
CHD1-212ENST00000614616 NISCHQ9Y2I1 1504 aa20.9■□□□□ 0.94
CHD1-212ENST00000614616 NEFLP07196 543 aa20.86■□□□□ 0.93
CHD1-212ENST00000614616 YTHDC1Q96MU7 727 aaKnown RBP20.84■□□□□ 0.93
CHD1-212ENST00000614616 HRCP23327 699 aa20.75■□□□□ 0.91
CHD1-212ENST00000614616 SHROOM4Q9ULL8 1493 aa20.73■□□□□ 0.91
CHD1-212ENST00000614616 APLP2Q06481 763 aa20.68■□□□□ 0.9
CHD1-212ENST00000614616 EHMT2Q96KQ7 1210 aa20.61■□□□□ 0.89
CHD1-212ENST00000614616 TRIM26Q12899 539 aaPredicted RBP20.37■□□□□ 0.85
CHD1-212ENST00000614616 DAXXQ9UER7 740 aaPredicted RBP20.34■□□□□ 0.85
CHD1-212ENST00000614616 RTL5Q5HYW3 569 aaPredicted RBP20.28■□□□□ 0.84
CHD1-212ENST00000614616 FAM9AQ8IZU1 332 aaPredicted RBP20.09■□□□□ 0.81
CHD1-212ENST00000614616 GTF3C3Q9Y5Q9 886 aa20.02■□□□□ 0.8
CHD1-212ENST00000614616 DIEXFQ68CQ4 756 aaKnown RBP20.01■□□□□ 0.79
CHD1-212ENST00000614616 PPARGC1BQ86YN6 1023 aaKnown RBP19.99■□□□□ 0.79
CHD1-212ENST00000614616 ZNF316A6NFI3 1004 aaPredicted RBP19.9■□□□□ 0.78
CHD1-212ENST00000614616 TRIM41Q8WV44 630 aa19.88■□□□□ 0.77
CHD1-212ENST00000614616 GLIPR1L2Q4G1C9 344 aa19.87■□□□□ 0.77
CHD1-212ENST00000614616 MYT1LQ9UL68 1186 aa19.77■□□□□ 0.76
CHD1-212ENST00000614616 ACIN1Q9UKV3 1341 aaKnown RBP19.75■□□□□ 0.75
CHD1-212ENST00000614616 CDK11AQ9UQ88 783 aaPredicted RBP19.7■□□□□ 0.74
CHD1-212ENST00000614616 CLSPNQ9HAW4 1339 aa19.7■□□□□ 0.74
CHD1-212ENST00000614616 EIF5BO60841 1220 aaKnown RBP19.59■□□□□ 0.73
CHD1-212ENST00000614616 UBTFP17480 764 aaKnown RBP19.59■□□□□ 0.73
CHD1-212ENST00000614616 ANP32AP39687 249 aaKnown RBP19.44■□□□□ 0.7
CHD1-212ENST00000614616 RANGAP1P46060 587 aaPredicted RBP19.44■□□□□ 0.7
CHD1-212ENST00000614616 BCANQ96GW7 911 aa19.42■□□□□ 0.7
CHD1-212ENST00000614616 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.4■□□□□ 0.7
CHD1-212ENST00000614616 SCAF1Q9H7N4 1312 aaKnown RBP19.34■□□□□ 0.69
CHD1-212ENST00000614616 ATP1B4Q9UN42 357 aaPredicted RBP19.33■□□□□ 0.68
CHD1-212ENST00000614616 LOC105371045A0A1W2PR82 267 aa19.3■□□□□ 0.68
CHD1-212ENST00000614616 CHIC1Q5VXU3 224 aa19.21■□□□□ 0.67
CHD1-212ENST00000614616 ANP32CO43423 234 aa19.17■□□□□ 0.66
CHD1-212ENST00000614616 HNRNPUL2Q1KMD3 747 aaKnown RBP19.17■□□□□ 0.66
CHD1-212ENST00000614616 ANP32EQ9BTT0 268 aa19.16■□□□□ 0.66
CHD1-212ENST00000614616 ANP32BQ92688 251 aaKnown RBP19.15■□□□□ 0.66
CHD1-212ENST00000614616 POLR3GLQ9BT43 218 aa19.13■□□□□ 0.65
CHD1-212ENST00000614616 BCL11AQ9H165 835 aa19.12■□□□□ 0.65
CHD1-212ENST00000614616 CCDC180Q9P1Z9 1646 aa19.09■□□□□ 0.65
CHD1-212ENST00000614616 NEUROD1Q13562 356 aa19.07■□□□□ 0.64
CHD1-212ENST00000614616 NBR1Q14596 966 aa19.06■□□□□ 0.64
CHD1-212ENST00000614616 DCAF1Q9Y4B6 1507 aa19.06■□□□□ 0.64
CHD1-212ENST00000614616 ITGAEP38570 1179 aa19.02■□□□□ 0.64
CHD1-212ENST00000614616 FKBP8Q14318 412 aa19■□□□□ 0.63
CHD1-212ENST00000614616 ZBTB47Q9UFB7 747 aaPredicted RBP18.96■□□□□ 0.63
CHD1-212ENST00000614616 NPM2Q86SE8 214 aaKnown RBP18.93■□□□□ 0.62
CHD1-212ENST00000614616 CNGB1Q14028 1251 aaPredicted RBP18.9■□□□□ 0.62
CHD1-212ENST00000614616 TNNT2P45379 298 aaPredicted RBP18.9■□□□□ 0.62
CHD1-212ENST00000614616 UPF2Q9HAU5 1272 aaKnown RBP18.75■□□□□ 0.59
CHD1-212ENST00000614616 ERICH6BQ5W0A0 696 aa18.7■□□□□ 0.58
CHD1-212ENST00000614616 HSP90AA1P07900 732 aaKnown RBP18.68■□□□□ 0.58
CHD1-212ENST00000614616 CANXP27824 592 aaKnown RBP18.68■□□□□ 0.58
CHD1-212ENST00000614616 DDRGK1Q96HY6 314 aa18.66■□□□□ 0.58
CHD1-212ENST00000614616 TRIM44Q96DX7 344 aaPredicted RBP18.65■□□□□ 0.58
CHD1-212ENST00000614616 CCDC136Q96JN2 1154 aa18.59■□□□□ 0.57
CHD1-212ENST00000614616 NCLP19338 710 aaKnown RBP18.58■□□□□ 0.57
CHD1-212ENST00000614616 CDK11BP21127 795 aaKnown RBP18.56■□□□□ 0.56
CHD1-212ENST00000614616 FAM50AQ14320 339 aaKnown RBP18.56■□□□□ 0.56
CHD1-212ENST00000614616 SLC4A1APQ9BWU0 796 aaKnown RBP18.56■□□□□ 0.56
CHD1-212ENST00000614616 HNRNPUQ00839 825 aaKnown RBP eCLIP18.55■□□□□ 0.56
CHD1-212ENST00000614616 NAP1L5Q96NT1 182 aaPredicted RBP18.55■□□□□ 0.56
CHD1-212ENST00000614616 NEFMP07197 916 aa18.54■□□□□ 0.56
CHD1-212ENST00000614616 ARXQ96QS3 562 aa18.53■□□□□ 0.56
CHD1-212ENST00000614616 RTN4Q9NQC3 1192 aaKnown RBP18.52■□□□□ 0.56
CHD1-212ENST00000614616 DEKP35659 375 aaKnown RBP18.49■□□□□ 0.55
CHD1-212ENST00000614616 NOP58Q9Y2X3 529 aaKnown RBP18.48■□□□□ 0.55
CHD1-212ENST00000614616 PPM1GO15355 546 aaPredicted RBP18.48■□□□□ 0.55
CHD1-212ENST00000614616 BECN1Q14457 450 aa18.47■□□□□ 0.55
CHD1-212ENST00000614616 MIER1Q8N108 512 aa18.47■□□□□ 0.55
CHD1-212ENST00000614616 TRIM52Q96A61 297 aa18.4■□□□□ 0.54
CHD1-212ENST00000614616 SUPT16HQ9Y5B9 1047 aaKnown RBP18.35■□□□□ 0.53
CHD1-212ENST00000614616 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.33■□□□□ 0.52
CHD1-212ENST00000614616 DDX10Q13206 875 aaKnown RBP18.31■□□□□ 0.52
CHD1-212ENST00000614616 GOLGA6L22H0YM25 854 aa18.29■□□□□ 0.52
CHD1-212ENST00000614616 FAM9BQ8IZU0 186 aa18.29■□□□□ 0.52
CHD1-212ENST00000614616 CSRNP3Q8WYN3 585 aa18.29■□□□□ 0.52
CHD1-212ENST00000614616 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.28■□□□□ 0.52
CHD1-212ENST00000614616 DNTTIP2Q5QJE6 756 aaKnown RBP18.27■□□□□ 0.52
CHD1-212ENST00000614616 TONSLQ96HA7 1378 aa18.26■□□□□ 0.51
CHD1-212ENST00000614616 IRX6P78412 446 aaPredicted RBP18.24■□□□□ 0.51
CHD1-212ENST00000614616 L1TD1Q5T7N2 865 aaKnown RBP18.24■□□□□ 0.51
CHD1-212ENST00000614616 ZNF326Q5BKZ1 582 aaKnown RBP18.21■□□□□ 0.51
CHD1-212ENST00000614616 RBM19Q9Y4C8 960 aaKnown RBP18.21■□□□□ 0.51
CHD1-212ENST00000614616 PTMAP06454 111 aaKnown RBP18.18■□□□□ 0.5
CHD1-212ENST00000614616 LAS1LQ9Y4W2 734 aaKnown RBP18.17■□□□□ 0.5
CHD1-212ENST00000614616 PPP4R2Q9NY27 417 aa18.15■□□□□ 0.5
CHD1-212ENST00000614616 TMC1Q8TDI8 760 aa18.15■□□□□ 0.5
CHD1-212ENST00000614616 RSPH6AQ9H0K4 717 aa18.15■□□□□ 0.5
CHD1-212ENST00000614616 MSNP26038 577 aaKnown RBP18.13■□□□□ 0.49
CHD1-212ENST00000614616 CHAF1AQ13111 956 aaPredicted RBP18.09■□□□□ 0.49
CHD1-212ENST00000614616 MYO15BQ96JP2 1530 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms