RNA–Protein interactions for RNA: ENST00000371648.4

EDF1-202, Transcript of endothelial differentiation related factor 1, humanhuman

TSL 1 (best) BASIC

Gene EDF1, Length 809 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EDF1-202ENST00000371648 NISCHQ9Y2I1 1504 aa35.39■■■■□ 3.26
EDF1-202ENST00000371648 ABCC9O60706 1549 aa31.74■■■□□ 2.67
EDF1-202ENST00000371648 CCDC180Q9P1Z9 1646 aa31.64■■■□□ 2.65
EDF1-202ENST00000371648 RB1CC1Q8TDY2 1594 aa30.15■■■□□ 2.42
EDF1-202ENST00000371648 DCAF8L2P0C7V8 631 aa30.03■■■□□ 2.4
EDF1-202ENST00000371648 NACADO15069 1562 aa29.96■■■□□ 2.39
EDF1-202ENST00000371648 DNAJC5BQ9UF47 199 aa29.78■■■□□ 2.36
EDF1-202ENST00000371648 PABPN1Q86U42 306 aaKnown RBP eCLIP29.64■■■□□ 2.34
EDF1-202ENST00000371648 MYO15BQ96JP2 1530 aa29.53■■■□□ 2.32
EDF1-202ENST00000371648 UNC13AQ9UPW8 1703 aa29.41■■■□□ 2.3
EDF1-202ENST00000371648 ZCCHC6Q5VYS8 1495 aaKnown RBP29.32■■■□□ 2.28
EDF1-202ENST00000371648 BICRAQ9NZM4 1560 aa29.27■■■□□ 2.28
EDF1-202ENST00000371648 DCAF1Q9Y4B6 1507 aa29.18■■■□□ 2.26
EDF1-202ENST00000371648 SCRIBQ14160 1630 aa28.93■■■□□ 2.22
EDF1-202ENST00000371648 SHROOM4Q9ULL8 1493 aa28.83■■■□□ 2.21
EDF1-202ENST00000371648 CC2D2AQ9P2K1 1620 aa28.61■■■□□ 2.17
EDF1-202ENST00000371648 CECR2Q9BXF3 1484 aa28.57■■■□□ 2.16
EDF1-202ENST00000371648 EIF4G1Q04637 1599 aaKnown RBP28.56■■■□□ 2.16
EDF1-202ENST00000371648 NCAPD3P42695 1498 aa27.69■■■□□ 2.02
EDF1-202ENST00000371648 ATAD2BQ9ULI0 1458 aa27.63■■■□□ 2.01
EDF1-202ENST00000371648 SMARCA4P51532 1647 aa27.56■■■□□ 2
EDF1-202ENST00000371648 SMARCA2P51531 1590 aa27.51■■□□□ 1.99
EDF1-202ENST00000371648 BAZ1AQ9NRL2 1556 aaPredicted RBP27.45■■□□□ 1.99
EDF1-202ENST00000371648 HMGXB3Q12766 1538 aa27.43■■□□□ 1.98
EDF1-202ENST00000371648 ERCC6Q03468 1493 aa27.39■■□□□ 1.98
EDF1-202ENST00000371648 BAZ1BQ9UIG0 1483 aaKnown RBP27.36■■□□□ 1.97
EDF1-202ENST00000371648 MROH2BQ7Z745 1585 aa27.29■■□□□ 1.96
EDF1-202ENST00000371648 NESP48681 1621 aa27.27■■□□□ 1.96
EDF1-202ENST00000371648 DNAJC5Q9H3Z4 198 aa27.27■■□□□ 1.96
EDF1-202ENST00000371648 PEG3Q9GZU2 1588 aa27.26■■□□□ 1.96
EDF1-202ENST00000371648 CUX2O14529 1486 aa27.26■■□□□ 1.95
EDF1-202ENST00000371648 LAMC3Q9Y6N6 1575 aa27.01■■□□□ 1.92
EDF1-202ENST00000371648 WIZO95785 1651 aa26.95■■□□□ 1.9
EDF1-202ENST00000371648 PDS5BQ9NTI5 1447 aa26.92■■□□□ 1.9
EDF1-202ENST00000371648 THOC2Q8NI27 1593 aaKnown RBP26.9■■□□□ 1.9
EDF1-202ENST00000371648 CADPSQ9ULU8 1353 aa26.88■■□□□ 1.89
EDF1-202ENST00000371648 KIF21AQ7Z4S6 1674 aa26.84■■□□□ 1.89
EDF1-202ENST00000371648 RSF1Q96T23 1441 aaPredicted RBP26.76■■□□□ 1.87
EDF1-202ENST00000371648 MRC2Q9UBG0 1479 aa26.67■■□□□ 1.86
EDF1-202ENST00000371648 TOP2AP11388 1531 aaKnown RBP26.6■■□□□ 1.85
EDF1-202ENST00000371648 CEP164Q9UPV0 1460 aa26.57■■□□□ 1.84
EDF1-202ENST00000371648 FANCD2Q9BXW9 1451 aa26.56■■□□□ 1.84
EDF1-202ENST00000371648 WDR62O43379 1518 aa26.56■■□□□ 1.84
EDF1-202ENST00000371648 CFTRP13569 1480 aa26.55■■□□□ 1.84
EDF1-202ENST00000371648 CCDC88BA6NC98 1476 aa26.35■■□□□ 1.81
EDF1-202ENST00000371648 URB2Q14146 1524 aaKnown RBP26.34■■□□□ 1.81
EDF1-202ENST00000371648 TRIM41Q8WV44 630 aa26.17■■□□□ 1.78
EDF1-202ENST00000371648 PRDM2Q13029 1718 aa26.17■■□□□ 1.78
EDF1-202ENST00000371648 OSCARQ8IYS5 282 aa26.13■■□□□ 1.77
EDF1-202ENST00000371648 TOPBP1Q92547 1522 aa26.06■■□□□ 1.76
EDF1-202ENST00000371648 IFT140Q96RY7 1462 aa26.04■■□□□ 1.76
EDF1-202ENST00000371648 ZNF608Q9ULD9 1512 aaPredicted RBP26.03■■□□□ 1.76
EDF1-202ENST00000371648 SUPT5HO00267 1087 aaKnown RBP26.01■■□□□ 1.75
EDF1-202ENST00000371648 ABCC8Q09428 1581 aa25.99■■□□□ 1.75
EDF1-202ENST00000371648 DNMBPQ6XZF7 1577 aa25.93■■□□□ 1.74
EDF1-202ENST00000371648 AQRO60306 1485 aaKnown RBP eCLIP25.82■■□□□ 1.725e-7■■■■■ 45.6
EDF1-202ENST00000371648 EIF4G3O43432 1585 aaKnown RBP25.82■■□□□ 1.72
EDF1-202ENST00000371648 POLA1P09884 1462 aaPredicted RBP25.79■■□□□ 1.72
EDF1-202ENST00000371648 TARBP1Q13395 1621 aaKnown RBP25.78■■□□□ 1.72
EDF1-202ENST00000371648 RAD54L2Q9Y4B4 1467 aa25.74■■□□□ 1.71
EDF1-202ENST00000371648 SOGA1O94964 1423 aa25.72■■□□□ 1.71
EDF1-202ENST00000371648 FBLN2P98095 1184 aa25.71■■□□□ 1.71
EDF1-202ENST00000371648 RIMBP3CA6NJZ7 1639 aa25.69■■□□□ 1.7
EDF1-202ENST00000371648 RIMBP3BA6NNM3 1639 aa25.69■■□□□ 1.7
EDF1-202ENST00000371648 RIMBP3Q9UFD9 1639 aa25.69■■□□□ 1.7
EDF1-202ENST00000371648 TDRD9Q8NDG6 1382 aaKnown RBP25.69■■□□□ 1.7
EDF1-202ENST00000371648 FGD5Q6ZNL6 1462 aa25.65■■□□□ 1.7
EDF1-202ENST00000371648 ARHGEF11O15085 1522 aa25.63■■□□□ 1.69
EDF1-202ENST00000371648 CUX1P39880 1505 aa25.63■■□□□ 1.69
EDF1-202ENST00000371648 CHD1O14646 1710 aa25.6■■□□□ 1.69
EDF1-202ENST00000371648 CYB5RLQ6IPT4 315 aa25.55■■□□□ 1.68
EDF1-202ENST00000371648 SNAPC4Q5SXM2 1469 aa25.53■■□□□ 1.68
EDF1-202ENST00000371648 CHMP7Q8WUX9 453 aaPredicted RBP25.5■■□□□ 1.67
EDF1-202ENST00000371648 WDR97A6NE52 1622 aa25.48■■□□□ 1.67
EDF1-202ENST00000371648 GRIN2BQ13224 1484 aa25.46■■□□□ 1.67
EDF1-202ENST00000371648 MAGI1Q96QZ7 1491 aaPredicted RBP25.42■■□□□ 1.66
EDF1-202ENST00000371648 GAPVD1Q14C86 1478 aa25.39■■□□□ 1.65
EDF1-202ENST00000371648 ARAP1Q96P48 1450 aa25.39■■□□□ 1.65
EDF1-202ENST00000371648 SYNJ2O15056 1496 aa25.35■■□□□ 1.65
EDF1-202ENST00000371648 ABCA10Q8WWZ4 1543 aa25.34■■□□□ 1.65
EDF1-202ENST00000371648 SYNJ1O43426 1573 aa25.33■■□□□ 1.65
EDF1-202ENST00000371648 CLASP1Q7Z460 1538 aa25.32■■□□□ 1.64
EDF1-202ENST00000371648 PBRM1Q86U86 1689 aa25.29■■□□□ 1.64
EDF1-202ENST00000371648 WRNQ14191 1432 aaPredicted RBP eCLIP25.29■■□□□ 1.64
EDF1-202ENST00000371648 ABCA5Q8WWZ7 1642 aa25.26■■□□□ 1.63
EDF1-202ENST00000371648 TRHP20396 242 aaPredicted RBP25.26■■□□□ 1.63
EDF1-202ENST00000371648 TOP2BQ02880 1626 aa25.19■■□□□ 1.62
EDF1-202ENST00000371648 BIVM-ERCC5R4GMW8 1640 aa25.17■■□□□ 1.62
EDF1-202ENST00000371648 GRIN2AQ12879 1464 aa25.12■■□□□ 1.61
EDF1-202ENST00000371648 ADAMTS12P58397 1594 aa25.08■■□□□ 1.61
EDF1-202ENST00000371648 FHAD1B1AJZ9 1412 aa25.06■■□□□ 1.6
EDF1-202ENST00000371648 NUP160Q12769 1436 aa25.03■■□□□ 1.6
EDF1-202ENST00000371648 CEP170Q5SW79 1584 aa25.01■■□□□ 1.59
EDF1-202ENST00000371648 ERICH3Q5RHP9 1530 aa25.01■■□□□ 1.59
EDF1-202ENST00000371648 ERCC6L2Q5T890 1561 aa24.98■■□□□ 1.59
EDF1-202ENST00000371648 JPH4Q96JJ6 628 aa24.86■■□□□ 1.57
EDF1-202ENST00000371648 SHROOM2Q13796 1616 aa24.86■■□□□ 1.57
EDF1-202ENST00000371648 PRG4Q92954 1404 aaPredicted RBP24.83■■□□□ 1.57
EDF1-202ENST00000371648 IGF1RP08069 1367 aa24.78■■□□□ 1.56
EDF1-202ENST00000371648 KIF27Q86VH2 1401 aa24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms