Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.395e-6■■■■□ 22.7
SMNDC1O75940 BAHCC1-206ENST00000584436 10801 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.452e-11■■■■□ 22.7
SMNDC1O75940 RHOT2-203ENST00000561929 625 ntTSL 212.12□□□□□ -0.475e-6■■■■□ 22.7
SMNDC1O75940 HGS-211ENST00000573949 461 ntTSL 511.92□□□□□ -0.55e-6■■■■□ 22.7
SMNDC1O75940 HNRNPL-204ENST00000595443 2122 ntTSL 211.25□□□□□ -0.612e-11■■■■□ 22.7
SMNDC1O75940 AC008982.1-201ENST00000594769 963 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.672e-11■■■■□ 22.7
SMNDC1O75940 APEH-212ENST00000469362 830 ntTSL 39.76□□□□□ -0.855e-6■■■■□ 22.7
SMNDC1O75940 LHFPL1-202ENST00000478229 629 ntTSL 39.73□□□□□ -0.855e-6■■■■□ 22.7
SMNDC1O75940 DDB1-213ENST00000539332 1767 ntTSL 29.03□□□□□ -0.965e-6■■■■□ 22.7
SMNDC1O75940 DDB1-212ENST00000538470 858 ntTSL 27.8□□□□□ -1.165e-6■■■■□ 22.7
SMNDC1O75940 AC008982.1-202ENST00000602021 342 ntTSL 57.21□□□□□ -1.262e-11■■■■□ 22.7
SMNDC1O75940 PPP2CB-207ENST00000520500 603 ntTSL 46.38□□□□□ -1.395e-6■■■■□ 22.7
SMNDC1O75940 PPP2CB-202ENST00000518243 577 ntTSL 36.21□□□□□ -1.425e-6■■■■□ 22.7
SMNDC1O75940 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC14.33□□□□□ -0.111e-7■■■■□ 22.7
SMNDC1O75940 PDHA1-213ENST00000545074 3391 ntAPPRIS ALT1 TSL 2 BASIC12.99□□□□□ -0.331e-7■■■■□ 22.7
SMNDC1O75940 PDHA1-206ENST00000422285 3310 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.331e-7■■■■□ 22.7
SMNDC1O75940 PDHA1-204ENST00000379806 3484 ntTSL 1 (best) BASIC12.04□□□□□ -0.481e-7■■■■□ 22.7
SMNDC1O75940 PDHA1-208ENST00000478795 791 ntTSL 210.12□□□□□ -0.791e-7■■■■□ 22.7
SMNDC1O75940 PDHA1-202ENST00000379804 709 ntTSL 2 BASIC7.14□□□□□ -1.271e-7■■■■□ 22.7
SMNDC1O75940 PDHA1-210ENST00000481733 437 ntTSL 26.06□□□□□ -1.441e-7■■■■□ 22.7
SMNDC1O75940 RTEL1-TNFRSF6B-201ENST00000480273 5751 ntTSL 217.77■□□□□ 0.442e-7■■■■□ 22.6
SMNDC1O75940 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.96■□□□□ 0.312e-7■■■■□ 22.6
SMNDC1O75940 RTEL1-TNFRSF6B-203ENST00000492259 4824 ntAPPRIS ALT2 TSL 515.99■□□□□ 0.152e-7■■■■□ 22.6
SMNDC1O75940 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.42■□□□□ 0.062e-7■■■■□ 22.6
SMNDC1O75940 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.41■□□□□ 0.062e-7■■■■□ 22.6
SMNDC1O75940 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.012e-7■■■■□ 22.6
SMNDC1O75940 RTEL1-211ENST00000508582 4273 ntTSL 2 BASIC12.81□□□□□ -0.362e-7■■■■□ 22.6
SMNDC1O75940 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.37■■□□□ 1.332e-6■■■■□ 22.6
SMNDC1O75940 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.262e-6■■■■□ 22.6
SMNDC1O75940 R3HDM4-205ENST00000589445 705 ntTSL 320■□□□□ 0.792e-6■■■■□ 22.6
SMNDC1O75940 R3HDM4-206ENST00000590454 1006 ntTSL 319.01■□□□□ 0.632e-6■■■■□ 22.6
SMNDC1O75940 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.622e-6■■■■□ 22.6
SMNDC1O75940 R3HDM4-204ENST00000589428 1704 ntTSL 318.86■□□□□ 0.612e-6■■■■□ 22.6
SMNDC1O75940 LSS-206ENST00000464357 1041 ntTSL 518.67■□□□□ 0.582e-6■■■■□ 22.6
SMNDC1O75940 IGF2BP3-213ENST00000491719 800 ntTSL 518.49■□□□□ 0.552e-6■■■■□ 22.6
SMNDC1O75940 C1orf159-212ENST00000467751 2099 ntTSL 218.43■□□□□ 0.542e-6■■■■□ 22.6
SMNDC1O75940 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.492e-6■■■■□ 22.6
SMNDC1O75940 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.482e-6■■■■□ 22.6
SMNDC1O75940 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.412e-6■■■■□ 22.6
SMNDC1O75940 GNB1L-206ENST00000481086 854 ntTSL 317.09■□□□□ 0.332e-6■■■■□ 22.6
SMNDC1O75940 USB1-213ENST00000566292 575 ntTSL 216.49■□□□□ 0.232e-6■■■■□ 22.6
SMNDC1O75940 TSC2-205ENST00000432909 374 ntTSL 316.3■□□□□ 0.22e-6■■■■□ 22.6
SMNDC1O75940 GNB1L-205ENST00000460402 1197 ntTSL 316.29■□□□□ 0.22e-6■■■■□ 22.6
SMNDC1O75940 LSS-204ENST00000450351 853 ntTSL 516.22■□□□□ 0.192e-6■■■■□ 22.6
SMNDC1O75940 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.11■□□□□ 0.172e-6■■■■□ 22.6
SMNDC1O75940 C1orf159-219ENST00000487177 3315 ntTSL 216.11■□□□□ 0.172e-6■■■■□ 22.6
SMNDC1O75940 C1orf159-203ENST00000379325 2010 ntTSL 215.82■□□□□ 0.122e-6■■■■□ 22.6
SMNDC1O75940 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.12e-6■■■■□ 22.6
SMNDC1O75940 C1orf159-207ENST00000434641 842 ntAPPRIS ALT2 TSL 515.65■□□□□ 0.12e-6■■■■□ 22.6
SMNDC1O75940 USB1-209ENST00000564387 558 ntTSL 415.38■□□□□ 0.052e-6■■■■□ 22.6
SMNDC1O75940 C1orf159-211ENST00000465822 1933 ntTSL 215.38■□□□□ 0.052e-6■■■■□ 22.6
SMNDC1O75940 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC15.29■□□□□ 0.043e-23■■■■□ 22.6
SMNDC1O75940 USB1-211ENST00000565662 719 ntTSL 415.05■□□□□ -02e-6■■■■□ 22.6
SMNDC1O75940 IGF2BP3-206ENST00000468005 2948 ntTSL 514.87□□□□□ -0.032e-6■■■■□ 22.6
SMNDC1O75940 USB1-204ENST00000561568 671 ntTSL 414.55□□□□□ -0.082e-6■■■■□ 22.6
SMNDC1O75940 USB1-206ENST00000562534 562 ntTSL 414.55□□□□□ -0.082e-6■■■■□ 22.6
SMNDC1O75940 C1orf159-216ENST00000477196 3214 ntTSL 214.43□□□□□ -0.12e-6■■■■□ 22.6
SMNDC1O75940 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.112e-6■■■■□ 22.6
SMNDC1O75940 IGF2BP3-210ENST00000476938 500 ntTSL 214.33□□□□□ -0.122e-6■■■■□ 22.6
SMNDC1O75940 USB1-215ENST00000569252 573 ntTSL 414.24□□□□□ -0.132e-6■■■■□ 22.6
SMNDC1O75940 USB1-208ENST00000563207 464 ntTSL 514□□□□□ -0.172e-6■■■■□ 22.6
SMNDC1O75940 DSCR3-209ENST00000488368 1013 ntTSL 1 (best)13.99□□□□□ -0.172e-6■■■■□ 22.6
SMNDC1O75940 SRP54-201ENST00000216774 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.193e-23■■■■□ 22.6
SMNDC1O75940 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC13.69□□□□□ -0.222e-6■■■■□ 22.6
SMNDC1O75940 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.66□□□□□ -0.222e-6■■■■□ 22.6
SMNDC1O75940 USB1-207ENST00000563149 1751 ntTSL 2 BASIC13.63□□□□□ -0.232e-6■■■■□ 22.6
SMNDC1O75940 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.57□□□□□ -0.242e-6■■■■□ 22.6
SMNDC1O75940 USB1-214ENST00000568848 548 ntTSL 413.49□□□□□ -0.252e-6■■■■□ 22.6
SMNDC1O75940 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.49□□□□□ -0.252e-6■■■■□ 22.6
SMNDC1O75940 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.49□□□□□ -0.252e-6■■■■□ 22.6
SMNDC1O75940 DSCR3-203ENST00000399000 4398 ntTSL 1 (best)13.49□□□□□ -0.252e-6■■■■□ 22.6
SMNDC1O75940 DSCR3-201ENST00000309117 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.32e-6■■■■□ 22.6
SMNDC1O75940 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.32e-6■■■■□ 22.6
SMNDC1O75940 C1orf159-210ENST00000464905 650 ntTSL 313.01□□□□□ -0.332e-6■■■■□ 22.6
SMNDC1O75940 DSCR3-211ENST00000495858 555 ntTSL 512.34□□□□□ -0.432e-6■■■■□ 22.6
SMNDC1O75940 R3HDM4-207ENST00000591829 823 ntTSL 512.32□□□□□ -0.442e-6■■■■□ 22.6
SMNDC1O75940 USB1-205ENST00000561743 1135 ntTSL 3 BASIC12.15□□□□□ -0.462e-6■■■■□ 22.6
SMNDC1O75940 SRP54-213ENST00000556994 2327 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.483e-23■■■■□ 22.6
SMNDC1O75940 IGF2BP3-202ENST00000421467 2988 ntTSL 511.27□□□□□ -0.612e-6■■■■□ 22.6
SMNDC1O75940 TBRG4-207ENST00000477328 596 ntTSL 210.72□□□□□ -0.695e-12■■■■□ 22.6
SMNDC1O75940 PPP2R5C-223ENST00000556805 558 ntTSL 410.09□□□□□ -0.792e-6■■■■□ 22.6
SMNDC1O75940 SRP54-208ENST00000555557 1949 ntTSL 2 BASIC9.33□□□□□ -0.923e-23■■■■□ 22.6
SMNDC1O75940 DKC1-205ENST00000437719 686 ntTSL 39.24□□□□□ -0.932e-6■■■■□ 22.6
SMNDC1O75940 PPP2R5C-217ENST00000556218 987 ntTSL 1 (best)9.16□□□□□ -0.942e-6■■■■□ 22.6
SMNDC1O75940 TSC2-224ENST00000568692 636 ntTSL 39.15□□□□□ -0.942e-6■■■■□ 22.6
SMNDC1O75940 DKC1-206ENST00000452771 708 ntTSL 58.66□□□□□ -1.022e-6■■■■□ 22.6
SMNDC1O75940 DKC1-203ENST00000413910 851 ntTSL 57.47□□□□□ -1.212e-6■■■■□ 22.6
SMNDC1O75940 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.262e-6■■■■□ 22.6
SMNDC1O75940 SRP54-212ENST00000556992 529 ntTSL 26.62□□□□□ -1.353e-23■■■■□ 22.6
SMNDC1O75940 PPP2R5C-228ENST00000557534 579 ntTSL 56.43□□□□□ -1.382e-6■■■■□ 22.6
SMNDC1O75940 PPP2R5C-210ENST00000554137 384 ntTSL 55.6□□□□□ -1.512e-6■■■■□ 22.6
SMNDC1O75940 PPP2R5C-231ENST00000557716 645 ntTSL 55.53□□□□□ -1.522e-6■■■■□ 22.6
SMNDC1O75940 SNORA5B-201ENST00000363786 132 ntBASIC2.67□□□□□ -1.985e-12■■■■□ 22.6
SMNDC1O75940 PTBP1-206ENST00000585856 1217 ntTSL 224.01■■□□□ 1.432e-6■■■■□ 22.6
SMNDC1O75940 RPL10-203ENST00000406022 748 ntTSL 3 BASIC12.07□□□□□ -0.487e-9■■■■□ 22.6
SMNDC1O75940 CPZ-205ENST00000506287 906 ntTSL 319.35■□□□□ 0.692e-6■■■■□ 22.6
SMNDC1O75940 CPZ-209ENST00000515606 2464 ntTSL 1 (best)19.26■□□□□ 0.672e-6■■■■□ 22.6
SMNDC1O75940 CPZ-207ENST00000514602 692 ntTSL 219.07■□□□□ 0.642e-6■■■■□ 22.6
SMNDC1O75940 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.582e-6■■■■□ 22.6
SMNDC1O75940 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.92■□□□□ 0.462e-6■■■■□ 22.6
Retrieved 100 of 11,362 protein–RNA pairs in 272 ms