RNA–Protein interactions for RNA: ENST00000562534.5

USB1-206, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 562 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-206ENST00000562534 NISCHQ9Y2I1 1504 aa38.95■■■■□ 3.83
USB1-206ENST00000562534 CCDC180Q9P1Z9 1646 aa34.41■■■■□ 3.1
USB1-206ENST00000562534 ABCC9O60706 1549 aa33.45■■■□□ 2.95
USB1-206ENST00000562534 DCAF8L2P0C7V8 631 aa32.6■■■□□ 2.81
USB1-206ENST00000562534 ZCCHC6Q5VYS8 1495 aaKnown RBP32.45■■■□□ 2.79
USB1-206ENST00000562534 NACADO15069 1562 aa32.37■■■□□ 2.77
USB1-206ENST00000562534 RB1CC1Q8TDY2 1594 aa32.32■■■□□ 2.76
USB1-206ENST00000562534 MYO15BQ96JP2 1530 aa32.3■■■□□ 2.76
USB1-206ENST00000562534 DCAF1Q9Y4B6 1507 aa32.25■■■□□ 2.75
USB1-206ENST00000562534 UNC13AQ9UPW8 1703 aa31.44■■■□□ 2.62
USB1-206ENST00000562534 SCRIBQ14160 1630 aa31.41■■■□□ 2.62
USB1-206ENST00000562534 PABPN1Q86U42 306 aaKnown RBP eCLIP31.4■■■□□ 2.62
USB1-206ENST00000562534 BICRAQ9NZM4 1560 aa31.26■■■□□ 2.6
USB1-206ENST00000562534 SHROOM4Q9ULL8 1493 aa31.02■■■□□ 2.56
USB1-206ENST00000562534 DNAJC5BQ9UF47 199 aa30.5■■■□□ 2.47
USB1-206ENST00000562534 EIF4G1Q04637 1599 aaKnown RBP30.44■■■□□ 2.46
USB1-206ENST00000562534 CECR2Q9BXF3 1484 aa30.29■■■□□ 2.44
USB1-206ENST00000562534 CC2D2AQ9P2K1 1620 aa30.24■■■□□ 2.43
USB1-206ENST00000562534 BAZ1AQ9NRL2 1556 aaPredicted RBP30.16■■■□□ 2.42
USB1-206ENST00000562534 SMARCA4P51532 1647 aa30.09■■■□□ 2.41
USB1-206ENST00000562534 MROH2BQ7Z745 1585 aa29.99■■■□□ 2.39
USB1-206ENST00000562534 ATAD2BQ9ULI0 1458 aa29.93■■■□□ 2.38
USB1-206ENST00000562534 NCAPD3P42695 1498 aa29.91■■■□□ 2.38
USB1-206ENST00000562534 SMARCA2P51531 1590 aa29.9■■■□□ 2.38
USB1-206ENST00000562534 PEG3Q9GZU2 1588 aa29.82■■■□□ 2.36
USB1-206ENST00000562534 RSF1Q96T23 1441 aaPredicted RBP29.81■■■□□ 2.36
USB1-206ENST00000562534 HMGXB3Q12766 1538 aa29.7■■■□□ 2.34
USB1-206ENST00000562534 BAZ1BQ9UIG0 1483 aaKnown RBP29.69■■■□□ 2.34
USB1-206ENST00000562534 WIZO95785 1651 aa29.65■■■□□ 2.34
USB1-206ENST00000562534 SUPT5HO00267 1087 aaKnown RBP29.38■■■□□ 2.29
USB1-206ENST00000562534 TOP2AP11388 1531 aaKnown RBP29.37■■■□□ 2.29
USB1-206ENST00000562534 CCDC88BA6NC98 1476 aa29.1■■■□□ 2.25
USB1-206ENST00000562534 CADPSQ9ULU8 1353 aa29.08■■■□□ 2.25
USB1-206ENST00000562534 LAMC3Q9Y6N6 1575 aa29.01■■■□□ 2.24
USB1-206ENST00000562534 NESP48681 1621 aa29.01■■■□□ 2.23
USB1-206ENST00000562534 CFTRP13569 1480 aa28.92■■■□□ 2.22
USB1-206ENST00000562534 PDS5BQ9NTI5 1447 aa28.9■■■□□ 2.22
USB1-206ENST00000562534 ERCC6Q03468 1493 aa28.84■■■□□ 2.21
USB1-206ENST00000562534 FANCD2Q9BXW9 1451 aa28.68■■■□□ 2.18
USB1-206ENST00000562534 CEP164Q9UPV0 1460 aa28.6■■■□□ 2.17
USB1-206ENST00000562534 KIF21AQ7Z4S6 1674 aa28.6■■■□□ 2.17
USB1-206ENST00000562534 PRDM2Q13029 1718 aa28.57■■■□□ 2.16
USB1-206ENST00000562534 MRC2Q9UBG0 1479 aa28.49■■■□□ 2.15
USB1-206ENST00000562534 THOC2Q8NI27 1593 aaKnown RBP28.43■■■□□ 2.14
USB1-206ENST00000562534 CUX2O14529 1486 aa28.42■■■□□ 2.14
USB1-206ENST00000562534 WDR62O43379 1518 aa28.35■■■□□ 2.13
USB1-206ENST00000562534 ABCC8Q09428 1581 aa28.35■■■□□ 2.13
USB1-206ENST00000562534 URB2Q14146 1524 aaKnown RBP28.33■■■□□ 2.13
USB1-206ENST00000562534 TOPBP1Q92547 1522 aa28.23■■■□□ 2.11
USB1-206ENST00000562534 DNMBPQ6XZF7 1577 aa28.2■■■□□ 2.11
USB1-206ENST00000562534 WRNQ14191 1432 aaPredicted RBP eCLIP28.11■■■□□ 2.09
USB1-206ENST00000562534 CUX1P39880 1505 aa28.1■■■□□ 2.09
USB1-206ENST00000562534 IFT140Q96RY7 1462 aa28.02■■■□□ 2.08
USB1-206ENST00000562534 POLA1P09884 1462 aaPredicted RBP28.01■■■□□ 2.07
USB1-206ENST00000562534 SOGA1O94964 1423 aa28■■■□□ 2.07
USB1-206ENST00000562534 FGD5Q6ZNL6 1462 aa27.98■■■□□ 2.07
USB1-206ENST00000562534 TOP2BQ02880 1626 aa27.95■■■□□ 2.06
USB1-206ENST00000562534 SYNJ1O43426 1573 aa27.91■■■□□ 2.06
USB1-206ENST00000562534 BIVM-ERCC5R4GMW8 1640 aa27.91■■■□□ 2.06
USB1-206ENST00000562534 RAD54L2Q9Y4B4 1467 aa27.89■■■□□ 2.06
USB1-206ENST00000562534 TARBP1Q13395 1621 aaKnown RBP27.86■■■□□ 2.05
USB1-206ENST00000562534 ZNF608Q9ULD9 1512 aaPredicted RBP27.81■■■□□ 2.04
USB1-206ENST00000562534 TDRD9Q8NDG6 1382 aaKnown RBP27.78■■■□□ 2.04
USB1-206ENST00000562534 TRIM41Q8WV44 630 aa27.78■■■□□ 2.04
USB1-206ENST00000562534 AQRO60306 1485 aaKnown RBP eCLIP27.76■■■□□ 2.03
USB1-206ENST00000562534 ABCA10Q8WWZ4 1543 aa27.75■■■□□ 2.03
USB1-206ENST00000562534 WDR97A6NE52 1622 aa27.69■■■□□ 2.02
USB1-206ENST00000562534 EIF4G3O43432 1585 aaKnown RBP27.65■■■□□ 2.02
USB1-206ENST00000562534 GAPVD1Q14C86 1478 aa27.64■■■□□ 2.01
USB1-206ENST00000562534 CHIC1Q5VXU3 224 aa27.6■■■□□ 2.01
USB1-206ENST00000562534 GRIN2BQ13224 1484 aa27.58■■■□□ 2.01
USB1-206ENST00000562534 KIF27Q86VH2 1401 aa27.53■■■□□ 2
USB1-206ENST00000562534 ABCA5Q8WWZ7 1642 aa27.52■■■□□ 2
USB1-206ENST00000562534 MAGI1Q96QZ7 1491 aaPredicted RBP27.46■■□□□ 1.99
USB1-206ENST00000562534 FBLN2P98095 1184 aa27.46■■□□□ 1.99
USB1-206ENST00000562534 OSCARQ8IYS5 282 aa27.45■■□□□ 1.98
USB1-206ENST00000562534 CHMP7Q8WUX9 453 aaPredicted RBP27.45■■□□□ 1.98
USB1-206ENST00000562534 SNAPC4Q5SXM2 1469 aa27.44■■□□□ 1.98
USB1-206ENST00000562534 ERICH3Q5RHP9 1530 aa27.42■■□□□ 1.98
USB1-206ENST00000562534 PBRM1Q86U86 1689 aa27.41■■□□□ 1.98
USB1-206ENST00000562534 IGF1RP08069 1367 aa27.41■■□□□ 1.98
USB1-206ENST00000562534 SYNJ2O15056 1496 aa27.36■■□□□ 1.97
USB1-206ENST00000562534 FHAD1B1AJZ9 1412 aa27.34■■□□□ 1.97
USB1-206ENST00000562534 DNAJC5Q9H3Z4 198 aa27.31■■□□□ 1.96
USB1-206ENST00000562534 RUSC2Q8N2Y8 1516 aa27.3■■□□□ 1.96
USB1-206ENST00000562534 CARMIL1Q5VZK9 1371 aa27.25■■□□□ 1.95
USB1-206ENST00000562534 ADAMTS12P58397 1594 aa27.23■■□□□ 1.95
USB1-206ENST00000562534 CHD1O14646 1710 aa27.23■■□□□ 1.95
USB1-206ENST00000562534 CSRNP3Q8WYN3 585 aa27.22■■□□□ 1.95
USB1-206ENST00000562534 EEA1Q15075 1411 aa27.22■■□□□ 1.95
USB1-206ENST00000562534 GRIN2AQ12879 1464 aa27.19■■□□□ 1.94
USB1-206ENST00000562534 CUL7Q14999 1698 aa27.19■■□□□ 1.94
USB1-206ENST00000562534 FAM9AQ8IZU1 332 aaPredicted RBP27.14■■□□□ 1.94
USB1-206ENST00000562534 RAPGEF2Q9Y4G8 1499 aa27.08■■□□□ 1.93
USB1-206ENST00000562534 NUP160Q12769 1436 aa27.07■■□□□ 1.92
USB1-206ENST00000562534 PRXQ9BXM0 1461 aa27.04■■□□□ 1.92
USB1-206ENST00000562534 CEP170Q5SW79 1584 aa26.99■■□□□ 1.91
USB1-206ENST00000562534 CLASP1Q7Z460 1538 aa26.99■■□□□ 1.91
USB1-206ENST00000562534 JPH4Q96JJ6 628 aa26.94■■□□□ 1.9
USB1-206ENST00000562534 KIAA0586Q9BVV6 1533 aa26.94■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 390 ms