RNA–Protein interactions for RNA: ENST00000589445.1

R3HDM4-205, Transcript of R3H domain containing 4, humanhuman

TSL 3

Gene R3HDM4, Length 705 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM4-205ENST00000589445 NISCHQ9Y2I1 1504 aa53.72■■■■■ 6.19
R3HDM4-205ENST00000589445 CCDC180Q9P1Z9 1646 aa47.71■■■■■ 5.23
R3HDM4-205ENST00000589445 ABCC9O60706 1549 aa46.15■■■■■ 4.98
R3HDM4-205ENST00000589445 ZCCHC6Q5VYS8 1495 aaKnown RBP44.91■■■■■ 4.78
R3HDM4-205ENST00000589445 DCAF8L2P0C7V8 631 aa44.66■■■■■ 4.74
R3HDM4-205ENST00000589445 RB1CC1Q8TDY2 1594 aa44.62■■■■■ 4.73
R3HDM4-205ENST00000589445 NACADO15069 1562 aa44.61■■■■■ 4.73
R3HDM4-205ENST00000589445 DCAF1Q9Y4B6 1507 aa44.43■■■■■ 4.7
R3HDM4-205ENST00000589445 MYO15BQ96JP2 1530 aa44.4■■■■■ 4.7
R3HDM4-205ENST00000589445 DNAJC5BQ9UF47 199 aa43.92■■■■■ 4.62
R3HDM4-205ENST00000589445 UNC13AQ9UPW8 1703 aa43.77■■■■■ 4.6
R3HDM4-205ENST00000589445 SCRIBQ14160 1630 aa43.63■■■■■ 4.58
R3HDM4-205ENST00000589445 BICRAQ9NZM4 1560 aa43.21■■■■■ 4.51
R3HDM4-205ENST00000589445 PABPN1Q86U42 306 aaKnown RBP eCLIP43.09■■■■■ 4.49
R3HDM4-205ENST00000589445 SHROOM4Q9ULL8 1493 aa42.82■■■■■ 4.45
R3HDM4-205ENST00000589445 EIF4G1Q04637 1599 aaKnown RBP42.06■■■■■ 4.32
R3HDM4-205ENST00000589445 CC2D2AQ9P2K1 1620 aa41.8■■■■■ 4.28
R3HDM4-205ENST00000589445 CECR2Q9BXF3 1484 aa41.79■■■■■ 4.28
R3HDM4-205ENST00000589445 SMARCA4P51532 1647 aa41.69■■■■■ 4.27
R3HDM4-205ENST00000589445 BAZ1AQ9NRL2 1556 aaPredicted RBP41.67■■■■■ 4.26
R3HDM4-205ENST00000589445 MROH2BQ7Z745 1585 aa41.44■■■■■ 4.22
R3HDM4-205ENST00000589445 SMARCA2P51531 1590 aa41.27■■■■■ 4.2
R3HDM4-205ENST00000589445 ATAD2BQ9ULI0 1458 aa41.21■■■■■ 4.19
R3HDM4-205ENST00000589445 PEG3Q9GZU2 1588 aa41.18■■■■■ 4.18
R3HDM4-205ENST00000589445 WIZO95785 1651 aa41.12■■■■■ 4.17
R3HDM4-205ENST00000589445 DNAJC5Q9H3Z4 198 aa41.11■■■■■ 4.17
R3HDM4-205ENST00000589445 RSF1Q96T23 1441 aaPredicted RBP41.06■■■■■ 4.16
R3HDM4-205ENST00000589445 NCAPD3P42695 1498 aa41.05■■■■■ 4.16
R3HDM4-205ENST00000589445 HMGXB3Q12766 1538 aa41.04■■■■■ 4.16
R3HDM4-205ENST00000589445 BAZ1BQ9UIG0 1483 aaKnown RBP41■■■■■ 4.15
R3HDM4-205ENST00000589445 TOP2AP11388 1531 aaKnown RBP40.67■■■■■ 4.1
R3HDM4-205ENST00000589445 SUPT5HO00267 1087 aaKnown RBP40.43■■■■■ 4.06
R3HDM4-205ENST00000589445 CCDC88BA6NC98 1476 aa40.09■■■■■ 4.01
R3HDM4-205ENST00000589445 CUX2O14529 1486 aa40.07■■■■■ 4.01
R3HDM4-205ENST00000589445 NESP48681 1621 aa40.07■■■■■ 4.01
R3HDM4-205ENST00000589445 LAMC3Q9Y6N6 1575 aa40.05■■■■■ 4
R3HDM4-205ENST00000589445 CADPSQ9ULU8 1353 aa39.88■■■■□ 3.97
R3HDM4-205ENST00000589445 PRDM2Q13029 1718 aa39.85■■■■□ 3.97
R3HDM4-205ENST00000589445 ERCC6Q03468 1493 aa39.81■■■■□ 3.96
R3HDM4-205ENST00000589445 CFTRP13569 1480 aa39.79■■■■□ 3.96
R3HDM4-205ENST00000589445 KIF21AQ7Z4S6 1674 aa39.76■■■■□ 3.96
R3HDM4-205ENST00000589445 PDS5BQ9NTI5 1447 aa39.66■■■■□ 3.94
R3HDM4-205ENST00000589445 FANCD2Q9BXW9 1451 aa39.55■■■■□ 3.92
R3HDM4-205ENST00000589445 CEP164Q9UPV0 1460 aa39.5■■■■□ 3.91
R3HDM4-205ENST00000589445 THOC2Q8NI27 1593 aaKnown RBP39.45■■■■□ 3.91
R3HDM4-205ENST00000589445 MRC2Q9UBG0 1479 aa39.32■■■■□ 3.89
R3HDM4-205ENST00000589445 WDR62O43379 1518 aa39.19■■■■□ 3.86
R3HDM4-205ENST00000589445 URB2Q14146 1524 aaKnown RBP39.13■■■■□ 3.85
R3HDM4-205ENST00000589445 DNMBPQ6XZF7 1577 aa39.03■■■■□ 3.84
R3HDM4-205ENST00000589445 TOPBP1Q92547 1522 aa38.98■■■■□ 3.83
R3HDM4-205ENST00000589445 ABCC8Q09428 1581 aa38.93■■■■□ 3.82
R3HDM4-205ENST00000589445 TRIM41Q8WV44 630 aa38.93■■■■□ 3.82
R3HDM4-205ENST00000589445 CUX1P39880 1505 aa38.89■■■■□ 3.82
R3HDM4-205ENST00000589445 WRNQ14191 1432 aaPredicted RBP eCLIP38.77■■■■□ 3.8
R3HDM4-205ENST00000589445 SYNJ1O43426 1573 aa38.76■■■■□ 3.8
R3HDM4-205ENST00000589445 BIVM-ERCC5R4GMW8 1640 aa38.74■■■■□ 3.79
R3HDM4-205ENST00000589445 TOP2BQ02880 1626 aa38.7■■■■□ 3.79
R3HDM4-205ENST00000589445 FGD5Q6ZNL6 1462 aa38.68■■■■□ 3.78
R3HDM4-205ENST00000589445 POLA1P09884 1462 aaPredicted RBP38.67■■■■□ 3.78
R3HDM4-205ENST00000589445 IFT140Q96RY7 1462 aa38.59■■■■□ 3.77
R3HDM4-205ENST00000589445 TARBP1Q13395 1621 aaKnown RBP38.55■■■■□ 3.76
R3HDM4-205ENST00000589445 RAD54L2Q9Y4B4 1467 aa38.49■■■■□ 3.75
R3HDM4-205ENST00000589445 WDR97A6NE52 1622 aa38.46■■■■□ 3.75
R3HDM4-205ENST00000589445 SOGA1O94964 1423 aa38.45■■■■□ 3.75
R3HDM4-205ENST00000589445 EIF4G3O43432 1585 aaKnown RBP38.41■■■■□ 3.74
R3HDM4-205ENST00000589445 ZNF608Q9ULD9 1512 aaPredicted RBP38.39■■■■□ 3.74
R3HDM4-205ENST00000589445 ABCA10Q8WWZ4 1543 aa38.27■■■■□ 3.72
R3HDM4-205ENST00000589445 ABCA5Q8WWZ7 1642 aa38.2■■■■□ 3.7
R3HDM4-205ENST00000589445 AQRO60306 1485 aaKnown RBP eCLIP38.19■■■■□ 3.72e-13■■■■■ 52.2
R3HDM4-205ENST00000589445 PBRM1Q86U86 1689 aa38.19■■■■□ 3.7
R3HDM4-205ENST00000589445 TDRD9Q8NDG6 1382 aaKnown RBP38.19■■■■□ 3.7
R3HDM4-205ENST00000589445 GAPVD1Q14C86 1478 aa38.07■■■■□ 3.68
R3HDM4-205ENST00000589445 OSCARQ8IYS5 282 aa38.03■■■■□ 3.68
R3HDM4-205ENST00000589445 GRIN2BQ13224 1484 aa38■■■■□ 3.67
R3HDM4-205ENST00000589445 SNAPC4Q5SXM2 1469 aa37.96■■■■□ 3.67
R3HDM4-205ENST00000589445 KIF27Q86VH2 1401 aa37.9■■■■□ 3.66
R3HDM4-205ENST00000589445 CHIC1Q5VXU3 224 aa37.9■■■■□ 3.66
R3HDM4-205ENST00000589445 CHD1O14646 1710 aa37.89■■■■□ 3.66
R3HDM4-205ENST00000589445 MAGI1Q96QZ7 1491 aaPredicted RBP37.86■■■■□ 3.65
R3HDM4-205ENST00000589445 ERICH3Q5RHP9 1530 aa37.85■■■■□ 3.65
R3HDM4-205ENST00000589445 ADAMTS12P58397 1594 aa37.83■■■■□ 3.65
R3HDM4-205ENST00000589445 CUL7Q14999 1698 aa37.72■■■■□ 3.63
R3HDM4-205ENST00000589445 RUSC2Q8N2Y8 1516 aa37.71■■■■□ 3.63
R3HDM4-205ENST00000589445 SYNJ2O15056 1496 aa37.71■■■■□ 3.63
R3HDM4-205ENST00000589445 RIMBP3CA6NJZ7 1639 aa37.69■■■■□ 3.62
R3HDM4-205ENST00000589445 RIMBP3BA6NNM3 1639 aa37.69■■■■□ 3.62
R3HDM4-205ENST00000589445 RIMBP3Q9UFD9 1639 aa37.69■■■■□ 3.62
R3HDM4-205ENST00000589445 FBLN2P98095 1184 aa37.66■■■■□ 3.62
R3HDM4-205ENST00000589445 FHAD1B1AJZ9 1412 aa37.61■■■■□ 3.61
R3HDM4-205ENST00000589445 IGF1RP08069 1367 aa37.56■■■■□ 3.6
R3HDM4-205ENST00000589445 CHMP7Q8WUX9 453 aaPredicted RBP37.56■■■■□ 3.6
R3HDM4-205ENST00000589445 GRIN2AQ12879 1464 aa37.54■■■■□ 3.6
R3HDM4-205ENST00000589445 EEA1Q15075 1411 aa37.48■■■■□ 3.59
R3HDM4-205ENST00000589445 ARHGEF11O15085 1522 aa37.46■■■■□ 3.59
R3HDM4-205ENST00000589445 CARMIL1Q5VZK9 1371 aa37.42■■■■□ 3.58
R3HDM4-205ENST00000589445 CEP170Q5SW79 1584 aa37.4■■■■□ 3.58
R3HDM4-205ENST00000589445 FAM9AQ8IZU1 332 aaPredicted RBP37.39■■■■□ 3.58
R3HDM4-205ENST00000589445 CLASP1Q7Z460 1538 aa37.34■■■■□ 3.57
R3HDM4-205ENST00000589445 RAPGEF2Q9Y4G8 1499 aa37.32■■■■□ 3.56
R3HDM4-205ENST00000589445 NUP160Q12769 1436 aa37.28■■■■□ 3.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms