RNA–Protein interactions for RNA: ENST00000564387.5

USB1-209, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-209ENST00000564387 NISCHQ9Y2I1 1504 aa42.15■■■■■ 4.34
USB1-209ENST00000564387 CCDC180Q9P1Z9 1646 aa37.45■■■■□ 3.59
USB1-209ENST00000564387 ABCC9O60706 1549 aa36.49■■■■□ 3.43
USB1-209ENST00000564387 NACADO15069 1562 aa35.21■■■■□ 3.23
USB1-209ENST00000564387 RB1CC1Q8TDY2 1594 aa35.18■■■■□ 3.22
USB1-209ENST00000564387 ZCCHC6Q5VYS8 1495 aaKnown RBP35.13■■■■□ 3.21
USB1-209ENST00000564387 MYO15BQ96JP2 1530 aa35.11■■■■□ 3.21
USB1-209ENST00000564387 DCAF8L2P0C7V8 631 aa35■■■■□ 3.19
USB1-209ENST00000564387 DCAF1Q9Y4B6 1507 aa34.95■■■■□ 3.19
USB1-209ENST00000564387 UNC13AQ9UPW8 1703 aa34.38■■■■□ 3.09
USB1-209ENST00000564387 BICRAQ9NZM4 1560 aa34.18■■■■□ 3.06
USB1-209ENST00000564387 PABPN1Q86U42 306 aaKnown RBP eCLIP34.09■■■■□ 3.05
USB1-209ENST00000564387 SCRIBQ14160 1630 aa34.06■■■■□ 3.04
USB1-209ENST00000564387 SHROOM4Q9ULL8 1493 aa33.86■■■■□ 3.01
USB1-209ENST00000564387 DNAJC5BQ9UF47 199 aa33.52■■■□□ 2.96
USB1-209ENST00000564387 EIF4G1Q04637 1599 aaKnown RBP33.22■■■□□ 2.91
USB1-209ENST00000564387 CC2D2AQ9P2K1 1620 aa33.06■■■□□ 2.88
USB1-209ENST00000564387 CECR2Q9BXF3 1484 aa32.8■■■□□ 2.84
USB1-209ENST00000564387 SMARCA4P51532 1647 aa32.66■■■□□ 2.82
USB1-209ENST00000564387 BAZ1AQ9NRL2 1556 aaPredicted RBP32.64■■■□□ 2.82
USB1-209ENST00000564387 NCAPD3P42695 1498 aa32.52■■■□□ 2.8
USB1-209ENST00000564387 ATAD2BQ9ULI0 1458 aa32.5■■■□□ 2.79
USB1-209ENST00000564387 MROH2BQ7Z745 1585 aa32.46■■■□□ 2.79
USB1-209ENST00000564387 SMARCA2P51531 1590 aa32.45■■■□□ 2.78
USB1-209ENST00000564387 PEG3Q9GZU2 1588 aa32.43■■■□□ 2.78
USB1-209ENST00000564387 HMGXB3Q12766 1538 aa32.33■■■□□ 2.77
USB1-209ENST00000564387 BAZ1BQ9UIG0 1483 aaKnown RBP32.18■■■□□ 2.74
USB1-209ENST00000564387 RSF1Q96T23 1441 aaPredicted RBP32.14■■■□□ 2.74
USB1-209ENST00000564387 WIZO95785 1651 aa32.08■■■□□ 2.73
USB1-209ENST00000564387 TOP2AP11388 1531 aaKnown RBP31.77■■■□□ 2.68
USB1-209ENST00000564387 NESP48681 1621 aa31.62■■■□□ 2.65
USB1-209ENST00000564387 LAMC3Q9Y6N6 1575 aa31.6■■■□□ 2.65
USB1-209ENST00000564387 CADPSQ9ULU8 1353 aa31.53■■■□□ 2.64
USB1-209ENST00000564387 CCDC88BA6NC98 1476 aa31.4■■■□□ 2.62
USB1-209ENST00000564387 ERCC6Q03468 1493 aa31.4■■■□□ 2.62
USB1-209ENST00000564387 CFTRP13569 1480 aa31.38■■■□□ 2.61
USB1-209ENST00000564387 PDS5BQ9NTI5 1447 aa31.36■■■□□ 2.61
USB1-209ENST00000564387 KIF21AQ7Z4S6 1674 aa31.23■■■□□ 2.59
USB1-209ENST00000564387 SUPT5HO00267 1087 aaKnown RBP31.2■■■□□ 2.59
USB1-209ENST00000564387 CUX2O14529 1486 aa31.17■■■□□ 2.58
USB1-209ENST00000564387 THOC2Q8NI27 1593 aaKnown RBP31.17■■■□□ 2.58
USB1-209ENST00000564387 FANCD2Q9BXW9 1451 aa31.13■■■□□ 2.57
USB1-209ENST00000564387 PRDM2Q13029 1718 aa31.09■■■□□ 2.57
USB1-209ENST00000564387 CEP164Q9UPV0 1460 aa31.07■■■□□ 2.56
USB1-209ENST00000564387 MRC2Q9UBG0 1479 aa31.03■■■□□ 2.56
USB1-209ENST00000564387 WDR62O43379 1518 aa30.96■■■□□ 2.55
USB1-209ENST00000564387 URB2Q14146 1524 aaKnown RBP30.83■■■□□ 2.53
USB1-209ENST00000564387 ABCC8Q09428 1581 aa30.68■■■□□ 2.5
USB1-209ENST00000564387 TOPBP1Q92547 1522 aa30.65■■■□□ 2.5
USB1-209ENST00000564387 DNMBPQ6XZF7 1577 aa30.62■■■□□ 2.49
USB1-209ENST00000564387 CUX1P39880 1505 aa30.45■■■□□ 2.47
USB1-209ENST00000564387 IFT140Q96RY7 1462 aa30.44■■■□□ 2.46
USB1-209ENST00000564387 POLA1P09884 1462 aaPredicted RBP30.4■■■□□ 2.46
USB1-209ENST00000564387 TARBP1Q13395 1621 aaKnown RBP30.34■■■□□ 2.45
USB1-209ENST00000564387 FGD5Q6ZNL6 1462 aa30.31■■■□□ 2.44
USB1-209ENST00000564387 ZNF608Q9ULD9 1512 aaPredicted RBP30.28■■■□□ 2.44
USB1-209ENST00000564387 SOGA1O94964 1423 aa30.26■■■□□ 2.43
USB1-209ENST00000564387 WRNQ14191 1432 aaPredicted RBP eCLIP30.25■■■□□ 2.43
USB1-209ENST00000564387 RAD54L2Q9Y4B4 1467 aa30.23■■■□□ 2.43
USB1-209ENST00000564387 BIVM-ERCC5R4GMW8 1640 aa30.22■■■□□ 2.43
USB1-209ENST00000564387 TOP2BQ02880 1626 aa30.21■■■□□ 2.43
USB1-209ENST00000564387 SYNJ1O43426 1573 aa30.17■■■□□ 2.42
USB1-209ENST00000564387 EIF4G3O43432 1585 aaKnown RBP30.15■■■□□ 2.42
USB1-209ENST00000564387 DNAJC5Q9H3Z4 198 aa30.15■■■□□ 2.42
USB1-209ENST00000564387 WDR97A6NE52 1622 aa30.13■■■□□ 2.41
USB1-209ENST00000564387 AQRO60306 1485 aaKnown RBP eCLIP30.12■■■□□ 2.41
USB1-209ENST00000564387 ABCA10Q8WWZ4 1543 aa30.07■■■□□ 2.4
USB1-209ENST00000564387 TDRD9Q8NDG6 1382 aaKnown RBP30.06■■■□□ 2.4
USB1-209ENST00000564387 ABCA5Q8WWZ7 1642 aa29.93■■■□□ 2.38
USB1-209ENST00000564387 GAPVD1Q14C86 1478 aa29.92■■■□□ 2.38
USB1-209ENST00000564387 GRIN2BQ13224 1484 aa29.91■■■□□ 2.38
USB1-209ENST00000564387 OSCARQ8IYS5 282 aa29.85■■■□□ 2.37
USB1-209ENST00000564387 MAGI1Q96QZ7 1491 aaPredicted RBP29.84■■■□□ 2.37
USB1-209ENST00000564387 SNAPC4Q5SXM2 1469 aa29.82■■■□□ 2.36
USB1-209ENST00000564387 PBRM1Q86U86 1689 aa29.81■■■□□ 2.36
USB1-209ENST00000564387 CHD1O14646 1710 aa29.74■■■□□ 2.35
USB1-209ENST00000564387 SYNJ2O15056 1496 aa29.71■■■□□ 2.35
USB1-209ENST00000564387 ERICH3Q5RHP9 1530 aa29.71■■■□□ 2.35
USB1-209ENST00000564387 FBLN2P98095 1184 aa29.64■■■□□ 2.34
USB1-209ENST00000564387 CHMP7Q8WUX9 453 aaPredicted RBP29.63■■■□□ 2.33
USB1-209ENST00000564387 KIF27Q86VH2 1401 aa29.62■■■□□ 2.33
USB1-209ENST00000564387 ADAMTS12P58397 1594 aa29.61■■■□□ 2.33
USB1-209ENST00000564387 FHAD1B1AJZ9 1412 aa29.59■■■□□ 2.33
USB1-209ENST00000564387 IGF1RP08069 1367 aa29.54■■■□□ 2.32
USB1-209ENST00000564387 TRIM41Q8WV44 630 aa29.52■■■□□ 2.32
USB1-209ENST00000564387 GRIN2AQ12879 1464 aa29.52■■■□□ 2.32
USB1-209ENST00000564387 CLASP1Q7Z460 1538 aa29.5■■■□□ 2.31
USB1-209ENST00000564387 NUP160Q12769 1436 aa29.44■■■□□ 2.3
USB1-209ENST00000564387 CUL7Q14999 1698 aa29.41■■■□□ 2.3
USB1-209ENST00000564387 ARHGEF11O15085 1522 aa29.37■■■□□ 2.29
USB1-209ENST00000564387 CEP170Q5SW79 1584 aa29.37■■■□□ 2.29
USB1-209ENST00000564387 RUSC2Q8N2Y8 1516 aa29.36■■■□□ 2.29
USB1-209ENST00000564387 RIMBP3CA6NJZ7 1639 aa29.35■■■□□ 2.29
USB1-209ENST00000564387 RIMBP3BA6NNM3 1639 aa29.35■■■□□ 2.29
USB1-209ENST00000564387 RIMBP3Q9UFD9 1639 aa29.35■■■□□ 2.29
USB1-209ENST00000564387 CARMIL1Q5VZK9 1371 aa29.32■■■□□ 2.28
USB1-209ENST00000564387 CHIC1Q5VXU3 224 aa29.26■■■□□ 2.27
USB1-209ENST00000564387 SHROOM2Q13796 1616 aa29.2■■■□□ 2.27
USB1-209ENST00000564387 RAPGEF2Q9Y4G8 1499 aa29.16■■■□□ 2.26
USB1-209ENST00000564387 KIAA0586Q9BVV6 1533 aa29.15■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms