RNA–Protein interactions for RNA: ENST00000569252.5

USB1-215, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 573 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-215ENST00000569252 NISCHQ9Y2I1 1504 aa37.82■■■■□ 3.65
USB1-215ENST00000569252 ABCC9O60706 1549 aa34.54■■■■□ 3.12
USB1-215ENST00000569252 CCDC180Q9P1Z9 1646 aa33.97■■■■□ 3.03
USB1-215ENST00000569252 DNAJC5BQ9UF47 199 aa32.74■■■□□ 2.83
USB1-215ENST00000569252 RB1CC1Q8TDY2 1594 aa32.51■■■□□ 2.79
USB1-215ENST00000569252 DCAF8L2P0C7V8 631 aa32.23■■■□□ 2.75
USB1-215ENST00000569252 NACADO15069 1562 aa32.18■■■□□ 2.74
USB1-215ENST00000569252 PABPN1Q86U42 306 aaKnown RBP eCLIP32.16■■■□□ 2.74
USB1-215ENST00000569252 UNC13AQ9UPW8 1703 aa31.97■■■□□ 2.71
USB1-215ENST00000569252 BICRAQ9NZM4 1560 aa31.74■■■□□ 2.67
USB1-215ENST00000569252 MYO15BQ96JP2 1530 aa31.51■■■□□ 2.63
USB1-215ENST00000569252 ZCCHC6Q5VYS8 1495 aaKnown RBP31.32■■■□□ 2.6
USB1-215ENST00000569252 SCRIBQ14160 1630 aa31.2■■■□□ 2.58
USB1-215ENST00000569252 CC2D2AQ9P2K1 1620 aa31.11■■■□□ 2.57
USB1-215ENST00000569252 DCAF1Q9Y4B6 1507 aa31.06■■■□□ 2.56
USB1-215ENST00000569252 CECR2Q9BXF3 1484 aa31.04■■■□□ 2.56
USB1-215ENST00000569252 EIF4G1Q04637 1599 aaKnown RBP30.93■■■□□ 2.54
USB1-215ENST00000569252 SHROOM4Q9ULL8 1493 aa30.93■■■□□ 2.54
USB1-215ENST00000569252 DNAJC5Q9H3Z4 198 aa30.06■■■□□ 2.4
USB1-215ENST00000569252 NCAPD3P42695 1498 aa29.74■■■□□ 2.35
USB1-215ENST00000569252 ERCC6Q03468 1493 aa29.73■■■□□ 2.35
USB1-215ENST00000569252 ATAD2BQ9ULI0 1458 aa29.7■■■□□ 2.35
USB1-215ENST00000569252 CUX2O14529 1486 aa29.65■■■□□ 2.34
USB1-215ENST00000569252 NESP48681 1621 aa29.63■■■□□ 2.33
USB1-215ENST00000569252 SMARCA4P51532 1647 aa29.6■■■□□ 2.33
USB1-215ENST00000569252 SMARCA2P51531 1590 aa29.49■■■□□ 2.31
USB1-215ENST00000569252 HMGXB3Q12766 1538 aa29.49■■■□□ 2.31
USB1-215ENST00000569252 BAZ1BQ9UIG0 1483 aaKnown RBP29.38■■■□□ 2.29
USB1-215ENST00000569252 BAZ1AQ9NRL2 1556 aaPredicted RBP29.32■■■□□ 2.28
USB1-215ENST00000569252 THOC2Q8NI27 1593 aaKnown RBP29.27■■■□□ 2.28
USB1-215ENST00000569252 MROH2BQ7Z745 1585 aa29.26■■■□□ 2.28
USB1-215ENST00000569252 PEG3Q9GZU2 1588 aa29.2■■■□□ 2.26
USB1-215ENST00000569252 KIF21AQ7Z4S6 1674 aa29.18■■■□□ 2.26
USB1-215ENST00000569252 LAMC3Q9Y6N6 1575 aa29.11■■■□□ 2.25
USB1-215ENST00000569252 PDS5BQ9NTI5 1447 aa28.94■■■□□ 2.22
USB1-215ENST00000569252 WIZO95785 1651 aa28.93■■■□□ 2.22
USB1-215ENST00000569252 CADPSQ9ULU8 1353 aa28.86■■■□□ 2.21
USB1-215ENST00000569252 TRIM41Q8WV44 630 aa28.82■■■□□ 2.2
USB1-215ENST00000569252 RSF1Q96T23 1441 aaPredicted RBP28.81■■■□□ 2.2
USB1-215ENST00000569252 MRC2Q9UBG0 1479 aa28.79■■■□□ 2.2
USB1-215ENST00000569252 WDR62O43379 1518 aa28.74■■■□□ 2.19
USB1-215ENST00000569252 SUPT5HO00267 1087 aaKnown RBP28.65■■■□□ 2.18
USB1-215ENST00000569252 CEP164Q9UPV0 1460 aa28.62■■■□□ 2.17
USB1-215ENST00000569252 FANCD2Q9BXW9 1451 aa28.59■■■□□ 2.17
USB1-215ENST00000569252 CFTRP13569 1480 aa28.46■■■□□ 2.15
USB1-215ENST00000569252 URB2Q14146 1524 aaKnown RBP28.44■■■□□ 2.14
USB1-215ENST00000569252 TOP2AP11388 1531 aaKnown RBP28.4■■■□□ 2.14
USB1-215ENST00000569252 OSCARQ8IYS5 282 aa28.27■■■□□ 2.12
USB1-215ENST00000569252 ZNF608Q9ULD9 1512 aaPredicted RBP28.2■■■□□ 2.1
USB1-215ENST00000569252 PRDM2Q13029 1718 aa28.16■■■□□ 2.1
USB1-215ENST00000569252 CCDC88BA6NC98 1476 aa28.15■■■□□ 2.1
USB1-215ENST00000569252 RIMBP3CA6NJZ7 1639 aa28.09■■■□□ 2.09
USB1-215ENST00000569252 RIMBP3BA6NNM3 1639 aa28.09■■■□□ 2.09
USB1-215ENST00000569252 RIMBP3Q9UFD9 1639 aa28.09■■■□□ 2.09
USB1-215ENST00000569252 TOPBP1Q92547 1522 aa28.03■■■□□ 2.08
USB1-215ENST00000569252 IFT140Q96RY7 1462 aa28.01■■■□□ 2.07
USB1-215ENST00000569252 EIF4G3O43432 1585 aaKnown RBP27.95■■■□□ 2.07
USB1-215ENST00000569252 ARHGEF11O15085 1522 aa27.94■■■□□ 2.06
USB1-215ENST00000569252 AQRO60306 1485 aaKnown RBP eCLIP27.87■■■□□ 2.05
USB1-215ENST00000569252 DNMBPQ6XZF7 1577 aa27.86■■■□□ 2.05
USB1-215ENST00000569252 CHD1O14646 1710 aa27.84■■■□□ 2.05
USB1-215ENST00000569252 TARBP1Q13395 1621 aaKnown RBP27.81■■■□□ 2.04
USB1-215ENST00000569252 CYB5RLQ6IPT4 315 aa27.79■■■□□ 2.04
USB1-215ENST00000569252 FBLN2P98095 1184 aa27.74■■■□□ 2.03
USB1-215ENST00000569252 RAD54L2Q9Y4B4 1467 aa27.74■■■□□ 2.03
USB1-215ENST00000569252 POLA1P09884 1462 aaPredicted RBP27.73■■■□□ 2.03
USB1-215ENST00000569252 ABCC8Q09428 1581 aa27.73■■■□□ 2.03
USB1-215ENST00000569252 ARAP1Q96P48 1450 aa27.69■■■□□ 2.02
USB1-215ENST00000569252 TDRD9Q8NDG6 1382 aaKnown RBP27.65■■■□□ 2.02
USB1-215ENST00000569252 SOGA1O94964 1423 aa27.57■■■□□ 2
USB1-215ENST00000569252 TRHP20396 242 aaPredicted RBP27.56■■■□□ 2
USB1-215ENST00000569252 SNAPC4Q5SXM2 1469 aa27.55■■■□□ 2
USB1-215ENST00000569252 FGD5Q6ZNL6 1462 aa27.54■■■□□ 2
USB1-215ENST00000569252 CUX1P39880 1505 aa27.5■■□□□ 1.99
USB1-215ENST00000569252 CLASP1Q7Z460 1538 aa27.44■■□□□ 1.98
USB1-215ENST00000569252 CHMP7Q8WUX9 453 aaPredicted RBP27.37■■□□□ 1.97
USB1-215ENST00000569252 WDR97A6NE52 1622 aa27.34■■□□□ 1.97
USB1-215ENST00000569252 GRIN2BQ13224 1484 aa27.32■■□□□ 1.96
USB1-215ENST00000569252 SYNJ1O43426 1573 aa27.31■■□□□ 1.96
USB1-215ENST00000569252 MAGI1Q96QZ7 1491 aaPredicted RBP27.31■■□□□ 1.96
USB1-215ENST00000569252 PBRM1Q86U86 1689 aa27.29■■□□□ 1.96
USB1-215ENST00000569252 SYNJ2O15056 1496 aa27.27■■□□□ 1.96
USB1-215ENST00000569252 GAPVD1Q14C86 1478 aa27.21■■□□□ 1.95
USB1-215ENST00000569252 WRNQ14191 1432 aaPredicted RBP eCLIP27.2■■□□□ 1.94
USB1-215ENST00000569252 ERCC6L2Q5T890 1561 aa27.17■■□□□ 1.94
USB1-215ENST00000569252 ABCA5Q8WWZ7 1642 aa27.16■■□□□ 1.94
USB1-215ENST00000569252 ABCA10Q8WWZ4 1543 aa27.11■■□□□ 1.93
USB1-215ENST00000569252 CEP170Q5SW79 1584 aa27.01■■□□□ 1.92
USB1-215ENST00000569252 GRIN2AQ12879 1464 aa27.01■■□□□ 1.91
USB1-215ENST00000569252 TOP2BQ02880 1626 aa27.01■■□□□ 1.91
USB1-215ENST00000569252 ADAMTS12P58397 1594 aa27■■□□□ 1.91
USB1-215ENST00000569252 BIVM-ERCC5R4GMW8 1640 aa26.96■■□□□ 1.91
USB1-215ENST00000569252 CHIC1Q5VXU3 224 aa26.92■■□□□ 1.9
USB1-215ENST00000569252 NUP160Q12769 1436 aa26.9■■□□□ 1.9
USB1-215ENST00000569252 AEBP2Q6ZN18 517 aaPredicted RBP26.9■■□□□ 1.9
USB1-215ENST00000569252 SHROOM2Q13796 1616 aa26.83■■□□□ 1.89
USB1-215ENST00000569252 FHAD1B1AJZ9 1412 aa26.82■■□□□ 1.88
USB1-215ENST00000569252 PRG4Q92954 1404 aaPredicted RBP26.73■■□□□ 1.87
USB1-215ENST00000569252 KIF13AQ9H1H9 1805 aa26.72■■□□□ 1.87
USB1-215ENST00000569252 ERICH3Q5RHP9 1530 aa26.72■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 171 ms