RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 AEBP2Q6ZN18 517 aaPredicted RBP23.67■■□□□ 1.38
SRP54-212ENST00000556992 CHIC1Q5VXU3 224 aa22.33■■□□□ 1.17
SRP54-212ENST00000556992 SENP3Q9H4L4 574 aaPredicted RBP20.05■□□□□ 0.8
SRP54-212ENST00000556992 PHF23Q9BUL5 403 aaPredicted RBP19.86■□□□□ 0.77
SRP54-212ENST00000556992 FOXD1Q16676 465 aa18.8■□□□□ 0.6
SRP54-212ENST00000556992 PLPPR3Q6T4P5 718 aa17.78■□□□□ 0.44
SRP54-212ENST00000556992 PPP6R1Q9UPN7 881 aa17.6■□□□□ 0.41
SRP54-212ENST00000556992 PIAS4Q8N2W9 510 aaPredicted RBP17.56■□□□□ 0.4
SRP54-212ENST00000556992 ADRA2BP18089 450 aa17.55■□□□□ 0.4
SRP54-212ENST00000556992 MSH5O43196 834 aa17.49■□□□□ 0.39
SRP54-212ENST00000556992 POTEDQ86YR6 584 aa17.27■□□□□ 0.36
SRP54-212ENST00000556992 MAPK8IP2Q13387 824 aaPredicted RBP16.16■□□□□ 0.18
SRP54-212ENST00000556992 DMRT2Q9Y5R5 561 aa15.91■□□□□ 0.14
SRP54-212ENST00000556992 SCAF1Q9H7N4 1312 aaKnown RBP15.85■□□□□ 0.13
SRP54-212ENST00000556992 PPP4R3CPQ6ZMV5 832 aa15.64■□□□□ 0.09
SRP54-212ENST00000556992 DCAF8L1A6NGE4 600 aa15.39■□□□□ 0.05
SRP54-212ENST00000556992 CNKSR2Q8WXI2 1034 aa15.3■□□□□ 0.04
SRP54-212ENST00000556992 HOXD11P31277 338 aaPredicted RBP15.29■□□□□ 0.04
SRP54-212ENST00000556992 RNF216Q9NWF9 866 aaPredicted RBP15.16■□□□□ 0.02
SRP54-212ENST00000556992 CACNB1Q02641 598 aaPredicted RBP15.13■□□□□ 0.01
SRP54-212ENST00000556992 RNF39Q9H2S5 420 aa14.97□□□□□ -0.01
SRP54-212ENST00000556992 NCBP3Q53F19 620 aaKnown RBP14.93□□□□□ -0.02
SRP54-212ENST00000556992 NPM3O75607 178 aaKnown RBP14.83□□□□□ -0.04
SRP54-212ENST00000556992 C1QBPQ07021 282 aaKnown RBP14.68□□□□□ -0.06
SRP54-212ENST00000556992 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.63□□□□□ -0.07
SRP54-212ENST00000556992 DNAJC5BQ9UF47 199 aa14.62□□□□□ -0.07
SRP54-212ENST00000556992 KCNA4P22459 653 aa14.56□□□□□ -0.08
SRP54-212ENST00000556992 U3KPZ7 1027 aaPredicted RBP14.34□□□□□ -0.11
SRP54-212ENST00000556992 SPINK5Q9NQ38 1064 aaPredicted RBP14.21□□□□□ -0.13
SRP54-212ENST00000556992 SLC4A2P04920 1241 aa14.19□□□□□ -0.14
SRP54-212ENST00000556992 CAPN15O75808 1086 aa14.14□□□□□ -0.15
SRP54-212ENST00000556992 DSG3P32926 999 aa14.03□□□□□ -0.16
SRP54-212ENST00000556992 TRHP20396 242 aaPredicted RBP13.93□□□□□ -0.18
SRP54-212ENST00000556992 ABCB7O75027 752 aa13.88□□□□□ -0.19
SRP54-212ENST00000556992 ZNF219Q9P2Y4 722 aaPredicted RBP13.77□□□□□ -0.21
SRP54-212ENST00000556992 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.75□□□□□ -0.21
SRP54-212ENST00000556992 APLP2Q06481 763 aa13.75□□□□□ -0.21
SRP54-212ENST00000556992 HNRNPUL2Q1KMD3 747 aaKnown RBP13.75□□□□□ -0.21
SRP54-212ENST00000556992 SAMD1Q6SPF0 538 aaPredicted RBP13.72□□□□□ -0.21
SRP54-212ENST00000556992 SLC4A1APQ9BWU0 796 aaKnown RBP13.68□□□□□ -0.22
SRP54-212ENST00000556992 MYCNP04198 464 aaPredicted RBP13.65□□□□□ -0.22
SRP54-212ENST00000556992 POLA2Q14181 598 aa13.51□□□□□ -0.25
SRP54-212ENST00000556992 POTEHQ6S545 545 aa13.51□□□□□ -0.25
SRP54-212ENST00000556992 FOXD4L1Q9NU39 408 aa13.5□□□□□ -0.25
SRP54-212ENST00000556992 ATF5Q9Y2D1 282 aaPredicted RBP13.49□□□□□ -0.25
SRP54-212ENST00000556992 ZBTB22O15209 634 aa13.42□□□□□ -0.26
SRP54-212ENST00000556992 RBM42Q9BTD8 480 aaKnown RBP13.28□□□□□ -0.28
SRP54-212ENST00000556992 OSCARQ8IYS5 282 aa13.12□□□□□ -0.31
SRP54-212ENST00000556992 CHRDL2Q6WN34 429 aa13.11□□□□□ -0.31
SRP54-212ENST00000556992 ZBTB12Q9Y330 459 aaPredicted RBP13.08□□□□□ -0.32
SRP54-212ENST00000556992 AKT1S1Q96B36 256 aa13□□□□□ -0.33
SRP54-212ENST00000556992 ATXN8OSP0DMR3 200 aa12.99□□□□□ -0.33
SRP54-212ENST00000556992 REM2Q8IYK8 340 aaPredicted RBP12.95□□□□□ -0.34
SRP54-212ENST00000556992 PITPNM1O00562 1244 aa12.85□□□□□ -0.35
SRP54-212ENST00000556992 MKRN4PQ13434 485 aaPredicted RBP12.82□□□□□ -0.36
SRP54-212ENST00000556992 PIP4P2Q8N4L2 257 aa12.82□□□□□ -0.36
SRP54-212ENST00000556992 FBLN2P98095 1184 aa12.81□□□□□ -0.36
SRP54-212ENST00000556992 SPDYE2BA6NHP3 402 aa12.72□□□□□ -0.37
SRP54-212ENST00000556992 SPDYE6P0CI01 402 aa12.72□□□□□ -0.37
SRP54-212ENST00000556992 SPDYE2Q495Y8 402 aa12.72□□□□□ -0.37
SRP54-212ENST00000556992 CSRNP3Q8WYN3 585 aa12.7□□□□□ -0.38
SRP54-212ENST00000556992 FXR2P51116 673 aaKnown RBP eCLIP12.67□□□□□ -0.38
SRP54-212ENST00000556992 ZNF692Q9BU19 519 aaPredicted RBP12.63□□□□□ -0.39
SRP54-212ENST00000556992 CLEC11AQ9Y240 323 aa12.63□□□□□ -0.39
SRP54-212ENST00000556992 SP7Q8TDD2 431 aaPredicted RBP12.62□□□□□ -0.39
SRP54-212ENST00000556992 EHMT2Q96KQ7 1210 aa12.61□□□□□ -0.39
SRP54-212ENST00000556992 HAX1O00165 279 aa12.6□□□□□ -0.39
SRP54-212ENST00000556992 SSUH2Q9Y2M2 353 aa12.58□□□□□ -0.4
SRP54-212ENST00000556992 SPDYE1Q8NFV5 336 aaPredicted RBP12.53□□□□□ -0.4
SRP54-212ENST00000556992 EVX2Q03828 476 aa12.52□□□□□ -0.41
SRP54-212ENST00000556992 PRKAR2AP13861 404 aaKnown RBP12.51□□□□□ -0.41
SRP54-212ENST00000556992 PABPN1Q86U42 306 aaKnown RBP eCLIP12.47□□□□□ -0.41
SRP54-212ENST00000556992 CHADLQ6NUI6 762 aa12.44□□□□□ -0.42
SRP54-212ENST00000556992 PRR29P0C7W0 189 aa12.34□□□□□ -0.43
SRP54-212ENST00000556992 C19orf67A6NJJ6 358 aa12.28□□□□□ -0.44
SRP54-212ENST00000556992 SPDYE4A6NLX3 237 aa12.15□□□□□ -0.46
SRP54-212ENST00000556992 GABBR2O75899 941 aa12.15□□□□□ -0.46
SRP54-212ENST00000556992 FARP1Q9Y4F1 1045 aaPredicted RBP12.14□□□□□ -0.47
SRP54-212ENST00000556992 CD44P16070 742 aaKnown RBP12.1□□□□□ -0.47
SRP54-212ENST00000556992 CREBZFQ9NS37 354 aa12.06□□□□□ -0.48
SRP54-212ENST00000556992 STAG3Q9UJ98 1225 aa11.98□□□□□ -0.49
SRP54-212ENST00000556992 POTEIP0CG38 1075 aa11.94□□□□□ -0.5
SRP54-212ENST00000556992 ZRANB1Q9UGI0 708 aa11.93□□□□□ -0.5
SRP54-212ENST00000556992 LHX8Q68G74 356 aa11.85□□□□□ -0.51
SRP54-212ENST00000556992 ZNF579Q8NAF0 562 aaKnown RBP11.85□□□□□ -0.51
SRP54-212ENST00000556992 MNX1P50219 401 aaPredicted RBP11.83□□□□□ -0.52
SRP54-212ENST00000556992 GALR2O43603 387 aaPredicted RBP11.82□□□□□ -0.52
SRP54-212ENST00000556992 PHF12Q96QT6 1004 aa11.82□□□□□ -0.52
SRP54-212ENST00000556992 DCBLD2Q96PD2 775 aa11.79□□□□□ -0.52
SRP54-212ENST00000556992 PROM2Q8N271 834 aa11.78□□□□□ -0.52
SRP54-212ENST00000556992 PAK3O75914 559 aaPredicted RBP11.74□□□□□ -0.53
SRP54-212ENST00000556992 NPM1P06748 294 aaKnown RBP eCLIP11.73□□□□□ -0.53
SRP54-212ENST00000556992 CLCN6P51797 869 aa11.72□□□□□ -0.53
SRP54-212ENST00000556992 TSPYL2Q9H2G4 693 aaPredicted RBP11.67□□□□□ -0.54
SRP54-212ENST00000556992 MS4A3Q96HJ5 214 aa11.63□□□□□ -0.55
SRP54-212ENST00000556992 PELP1Q8IZL8 1130 aaKnown RBP11.6□□□□□ -0.55
SRP54-212ENST00000556992 MIER1Q8N108 512 aa11.6□□□□□ -0.55
SRP54-212ENST00000556992 POTEB2H3BUK9 544 aa11.57□□□□□ -0.56
SRP54-212ENST00000556992 FKBP8Q14318 412 aa11.55□□□□□ -0.56
SRP54-212ENST00000556992 CCDC61Q9Y6R9 512 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms