RNA–Protein interactions for RNA: ENST00000566292.5

USB1-213, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 575 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-213ENST00000566292 NISCHQ9Y2I1 1504 aa45.73■■■■■ 4.91
USB1-213ENST00000566292 CCDC180Q9P1Z9 1646 aa40.97■■■■■ 4.15
USB1-213ENST00000566292 ABCC9O60706 1549 aa40.67■■■■■ 4.1
USB1-213ENST00000566292 RB1CC1Q8TDY2 1594 aa38.84■■■■□ 3.81
USB1-213ENST00000566292 NACADO15069 1562 aa38.63■■■■□ 3.77
USB1-213ENST00000566292 DCAF8L2P0C7V8 631 aa38.41■■■■□ 3.74
USB1-213ENST00000566292 MYO15BQ96JP2 1530 aa38.17■■■■□ 3.7
USB1-213ENST00000566292 UNC13AQ9UPW8 1703 aa38.08■■■■□ 3.69
USB1-213ENST00000566292 ZCCHC6Q5VYS8 1495 aaKnown RBP37.96■■■■□ 3.67
USB1-213ENST00000566292 DNAJC5BQ9UF47 199 aa37.95■■■■□ 3.67
USB1-213ENST00000566292 PABPN1Q86U42 306 aaKnown RBP eCLIP37.88■■■■□ 3.65
USB1-213ENST00000566292 DCAF1Q9Y4B6 1507 aa37.79■■■■□ 3.64
USB1-213ENST00000566292 BICRAQ9NZM4 1560 aa37.76■■■■□ 3.63
USB1-213ENST00000566292 SCRIBQ14160 1630 aa37.34■■■■□ 3.57
USB1-213ENST00000566292 SHROOM4Q9ULL8 1493 aa37.2■■■■□ 3.54
USB1-213ENST00000566292 CC2D2AQ9P2K1 1620 aa36.8■■■■□ 3.48
USB1-213ENST00000566292 EIF4G1Q04637 1599 aaKnown RBP36.77■■■■□ 3.48
USB1-213ENST00000566292 CECR2Q9BXF3 1484 aa36.61■■■■□ 3.45
USB1-213ENST00000566292 SMARCA4P51532 1647 aa35.65■■■■□ 3.3
USB1-213ENST00000566292 NCAPD3P42695 1498 aa35.65■■■■□ 3.3
USB1-213ENST00000566292 ATAD2BQ9ULI0 1458 aa35.59■■■■□ 3.29
USB1-213ENST00000566292 SMARCA2P51531 1590 aa35.5■■■■□ 3.27
USB1-213ENST00000566292 BAZ1AQ9NRL2 1556 aaPredicted RBP35.47■■■■□ 3.27
USB1-213ENST00000566292 HMGXB3Q12766 1538 aa35.43■■■■□ 3.26
USB1-213ENST00000566292 PEG3Q9GZU2 1588 aa35.3■■■■□ 3.24
USB1-213ENST00000566292 MROH2BQ7Z745 1585 aa35.26■■■■□ 3.24
USB1-213ENST00000566292 BAZ1BQ9UIG0 1483 aaKnown RBP35.24■■■■□ 3.23
USB1-213ENST00000566292 ERCC6Q03468 1493 aa35.07■■■■□ 3.2
USB1-213ENST00000566292 NESP48681 1621 aa35.05■■■■□ 3.2
USB1-213ENST00000566292 CUX2O14529 1486 aa34.95■■■■□ 3.19
USB1-213ENST00000566292 WIZO95785 1651 aa34.88■■■■□ 3.17
USB1-213ENST00000566292 LAMC3Q9Y6N6 1575 aa34.83■■■■□ 3.17
USB1-213ENST00000566292 THOC2Q8NI27 1593 aaKnown RBP34.67■■■■□ 3.14
USB1-213ENST00000566292 KIF21AQ7Z4S6 1674 aa34.65■■■■□ 3.14
USB1-213ENST00000566292 DNAJC5Q9H3Z4 198 aa34.62■■■■□ 3.13
USB1-213ENST00000566292 RSF1Q96T23 1441 aaPredicted RBP34.59■■■■□ 3.13
USB1-213ENST00000566292 PDS5BQ9NTI5 1447 aa34.56■■■■□ 3.12
USB1-213ENST00000566292 CADPSQ9ULU8 1353 aa34.56■■■■□ 3.12
USB1-213ENST00000566292 TOP2AP11388 1531 aaKnown RBP34.42■■■■□ 3.1
USB1-213ENST00000566292 MRC2Q9UBG0 1479 aa34.28■■■■□ 3.08
USB1-213ENST00000566292 CFTRP13569 1480 aa34.24■■■■□ 3.07
USB1-213ENST00000566292 WDR62O43379 1518 aa34.22■■■■□ 3.07
USB1-213ENST00000566292 CEP164Q9UPV0 1460 aa34.2■■■■□ 3.06
USB1-213ENST00000566292 FANCD2Q9BXW9 1451 aa34.18■■■■□ 3.06
USB1-213ENST00000566292 PRDM2Q13029 1718 aa34.02■■■■□ 3.04
USB1-213ENST00000566292 CCDC88BA6NC98 1476 aa34.01■■■■□ 3.04
USB1-213ENST00000566292 URB2Q14146 1524 aaKnown RBP33.92■■■■□ 3.02
USB1-213ENST00000566292 TOPBP1Q92547 1522 aa33.58■■■□□ 2.97
USB1-213ENST00000566292 IFT140Q96RY7 1462 aa33.5■■■□□ 2.95
USB1-213ENST00000566292 DNMBPQ6XZF7 1577 aa33.49■■■□□ 2.95
USB1-213ENST00000566292 ABCC8Q09428 1581 aa33.48■■■□□ 2.95
USB1-213ENST00000566292 ZNF608Q9ULD9 1512 aaPredicted RBP33.45■■■□□ 2.95
USB1-213ENST00000566292 OSCARQ8IYS5 282 aa33.35■■■□□ 2.93
USB1-213ENST00000566292 TARBP1Q13395 1621 aaKnown RBP33.31■■■□□ 2.92
USB1-213ENST00000566292 EIF4G3O43432 1585 aaKnown RBP33.3■■■□□ 2.92
USB1-213ENST00000566292 POLA1P09884 1462 aaPredicted RBP33.25■■■□□ 2.91
USB1-213ENST00000566292 SUPT5HO00267 1087 aaKnown RBP33.2■■■□□ 2.91
USB1-213ENST00000566292 TRIM41Q8WV44 630 aa33.19■■■□□ 2.9
USB1-213ENST00000566292 AQRO60306 1485 aaKnown RBP eCLIP33.17■■■□□ 2.9
USB1-213ENST00000566292 RAD54L2Q9Y4B4 1467 aa33.13■■■□□ 2.89
USB1-213ENST00000566292 CUX1P39880 1505 aa33.11■■■□□ 2.89
USB1-213ENST00000566292 FGD5Q6ZNL6 1462 aa33.08■■■□□ 2.89
USB1-213ENST00000566292 SOGA1O94964 1423 aa33.08■■■□□ 2.89
USB1-213ENST00000566292 CHD1O14646 1710 aa33.05■■■□□ 2.88
USB1-213ENST00000566292 RIMBP3CA6NJZ7 1639 aa32.99■■■□□ 2.87
USB1-213ENST00000566292 RIMBP3BA6NNM3 1639 aa32.99■■■□□ 2.87
USB1-213ENST00000566292 RIMBP3Q9UFD9 1639 aa32.99■■■□□ 2.87
USB1-213ENST00000566292 TDRD9Q8NDG6 1382 aaKnown RBP32.97■■■□□ 2.87
USB1-213ENST00000566292 WDR97A6NE52 1622 aa32.95■■■□□ 2.86
USB1-213ENST00000566292 ARHGEF11O15085 1522 aa32.87■■■□□ 2.85
USB1-213ENST00000566292 FBLN2P98095 1184 aa32.84■■■□□ 2.85
USB1-213ENST00000566292 SNAPC4Q5SXM2 1469 aa32.84■■■□□ 2.85
USB1-213ENST00000566292 GRIN2BQ13224 1484 aa32.77■■■□□ 2.84
USB1-213ENST00000566292 MAGI1Q96QZ7 1491 aaPredicted RBP32.75■■■□□ 2.83
USB1-213ENST00000566292 PBRM1Q86U86 1689 aa32.75■■■□□ 2.83
USB1-213ENST00000566292 ABCA10Q8WWZ4 1543 aa32.72■■■□□ 2.83
USB1-213ENST00000566292 GAPVD1Q14C86 1478 aa32.69■■■□□ 2.82
USB1-213ENST00000566292 ABCA5Q8WWZ7 1642 aa32.69■■■□□ 2.82
USB1-213ENST00000566292 BIVM-ERCC5R4GMW8 1640 aa32.68■■■□□ 2.82
USB1-213ENST00000566292 TOP2BQ02880 1626 aa32.66■■■□□ 2.82
USB1-213ENST00000566292 CHMP7Q8WUX9 453 aaPredicted RBP32.64■■■□□ 2.82
USB1-213ENST00000566292 SYNJ1O43426 1573 aa32.63■■■□□ 2.81
USB1-213ENST00000566292 CLASP1Q7Z460 1538 aa32.63■■■□□ 2.81
USB1-213ENST00000566292 SYNJ2O15056 1496 aa32.63■■■□□ 2.81
USB1-213ENST00000566292 WRNQ14191 1432 aaPredicted RBP eCLIP32.61■■■□□ 2.81
USB1-213ENST00000566292 ARAP1Q96P48 1450 aa32.58■■■□□ 2.81
USB1-213ENST00000566292 CYB5RLQ6IPT4 315 aa32.56■■■□□ 2.8
USB1-213ENST00000566292 ADAMTS12P58397 1594 aa32.41■■■□□ 2.78
USB1-213ENST00000566292 GRIN2AQ12879 1464 aa32.36■■■□□ 2.77
USB1-213ENST00000566292 ERICH3Q5RHP9 1530 aa32.31■■■□□ 2.76
USB1-213ENST00000566292 CEP170Q5SW79 1584 aa32.28■■■□□ 2.76
USB1-213ENST00000566292 FHAD1B1AJZ9 1412 aa32.27■■■□□ 2.76
USB1-213ENST00000566292 NUP160Q12769 1436 aa32.25■■■□□ 2.75
USB1-213ENST00000566292 ERCC6L2Q5T890 1561 aa32.16■■■□□ 2.74
USB1-213ENST00000566292 SHROOM2Q13796 1616 aa32.12■■■□□ 2.73
USB1-213ENST00000566292 TRHP20396 242 aaPredicted RBP32.09■■■□□ 2.73
USB1-213ENST00000566292 KIF27Q86VH2 1401 aa31.96■■■□□ 2.71
USB1-213ENST00000566292 RUSC2Q8N2Y8 1516 aa31.95■■■□□ 2.71
USB1-213ENST00000566292 IGF1RP08069 1367 aa31.94■■■□□ 2.7
USB1-213ENST00000566292 CUL7Q14999 1698 aa31.92■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms