RNA–Protein interactions for RNA: ENST00000538470.2

DDB1-212, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 858 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-212ENST00000538470 NISCHQ9Y2I1 1504 aa21.73■■□□□ 1.07
DDB1-212ENST00000538470 CCDC180Q9P1Z9 1646 aa19.6■□□□□ 0.73
DDB1-212ENST00000538470 ABCC9O60706 1549 aa19.33■□□□□ 0.68
DDB1-212ENST00000538470 RB1CC1Q8TDY2 1594 aa18.55■□□□□ 0.56
DDB1-212ENST00000538470 NACADO15069 1562 aa18.44■□□□□ 0.54
DDB1-212ENST00000538470 MYO15BQ96JP2 1530 aa18.25■□□□□ 0.51
DDB1-212ENST00000538470 UNC13AQ9UPW8 1703 aa18.16■□□□□ 0.5
DDB1-212ENST00000538470 DCAF8L2P0C7V8 631 aa18.09■□□□□ 0.49
DDB1-212ENST00000538470 ZCCHC6Q5VYS8 1495 aaKnown RBP18.07■□□□□ 0.48
DDB1-212ENST00000538470 DCAF1Q9Y4B6 1507 aa18.03■□□□□ 0.48
DDB1-212ENST00000538470 BICRAQ9NZM4 1560 aa17.97■□□□□ 0.47
DDB1-212ENST00000538470 DNAJC5BQ9UF47 199 aa17.95■□□□□ 0.46
DDB1-212ENST00000538470 PABPN1Q86U42 306 aaKnown RBP eCLIP17.91■□□□□ 0.46
DDB1-212ENST00000538470 SHROOM4Q9ULL8 1493 aa17.86■□□□□ 0.45
DDB1-212ENST00000538470 SCRIBQ14160 1630 aa17.74■□□□□ 0.43
DDB1-212ENST00000538470 CC2D2AQ9P2K1 1620 aa17.54■□□□□ 0.4
DDB1-212ENST00000538470 EIF4G1Q04637 1599 aaKnown RBP17.53■□□□□ 0.4
DDB1-212ENST00000538470 CECR2Q9BXF3 1484 aa17.44■□□□□ 0.38
DDB1-212ENST00000538470 SMARCA4P51532 1647 aa16.97■□□□□ 0.31
DDB1-212ENST00000538470 NCAPD3P42695 1498 aa16.97■□□□□ 0.31
DDB1-212ENST00000538470 SMARCA2P51531 1590 aa16.94■□□□□ 0.3
DDB1-212ENST00000538470 HMGXB3Q12766 1538 aa16.93■□□□□ 0.3
DDB1-212ENST00000538470 ATAD2BQ9ULI0 1458 aa16.92■□□□□ 0.3
DDB1-212ENST00000538470 BAZ1AQ9NRL2 1556 aaPredicted RBP16.9■□□□□ 0.3
DDB1-212ENST00000538470 PEG3Q9GZU2 1588 aa16.85■□□□□ 0.29
DDB1-212ENST00000538470 BAZ1BQ9UIG0 1483 aaKnown RBP16.78■□□□□ 0.28
DDB1-212ENST00000538470 CUX2O14529 1486 aa16.73■□□□□ 0.27
DDB1-212ENST00000538470 ERCC6Q03468 1493 aa16.73■□□□□ 0.27
DDB1-212ENST00000538470 MROH2BQ7Z745 1585 aa16.71■□□□□ 0.27
DDB1-212ENST00000538470 LAMC3Q9Y6N6 1575 aa16.64■□□□□ 0.25
DDB1-212ENST00000538470 NESP48681 1621 aa16.62■□□□□ 0.25
DDB1-212ENST00000538470 THOC2Q8NI27 1593 aaKnown RBP16.56■□□□□ 0.24
DDB1-212ENST00000538470 WIZO95785 1651 aa16.53■□□□□ 0.24
DDB1-212ENST00000538470 KIF21AQ7Z4S6 1674 aa16.53■□□□□ 0.24
DDB1-212ENST00000538470 DNAJC5Q9H3Z4 198 aa16.5■□□□□ 0.23
DDB1-212ENST00000538470 PDS5BQ9NTI5 1447 aa16.47■□□□□ 0.23
DDB1-212ENST00000538470 CADPSQ9ULU8 1353 aa16.42■□□□□ 0.22
DDB1-212ENST00000538470 TOP2AP11388 1531 aaKnown RBP16.39■□□□□ 0.21
DDB1-212ENST00000538470 RSF1Q96T23 1441 aaPredicted RBP16.37■□□□□ 0.21
DDB1-212ENST00000538470 MRC2Q9UBG0 1479 aa16.35■□□□□ 0.21
DDB1-212ENST00000538470 WDR62O43379 1518 aa16.34■□□□□ 0.21
DDB1-212ENST00000538470 CEP164Q9UPV0 1460 aa16.3■□□□□ 0.2
DDB1-212ENST00000538470 PRDM2Q13029 1718 aa16.29■□□□□ 0.2
DDB1-212ENST00000538470 CFTRP13569 1480 aa16.29■□□□□ 0.2
DDB1-212ENST00000538470 FANCD2Q9BXW9 1451 aa16.26■□□□□ 0.19
DDB1-212ENST00000538470 URB2Q14146 1524 aaKnown RBP16.12■□□□□ 0.17
DDB1-212ENST00000538470 CCDC88BA6NC98 1476 aa16.1■□□□□ 0.17
DDB1-212ENST00000538470 ABCC8Q09428 1581 aa15.99■□□□□ 0.15
DDB1-212ENST00000538470 TOPBP1Q92547 1522 aa15.98■□□□□ 0.15
DDB1-212ENST00000538470 IFT140Q96RY7 1462 aa15.97■□□□□ 0.15
DDB1-212ENST00000538470 DNMBPQ6XZF7 1577 aa15.96■□□□□ 0.15
DDB1-212ENST00000538470 EIF4G3O43432 1585 aaKnown RBP15.89■□□□□ 0.13
DDB1-212ENST00000538470 ZNF608Q9ULD9 1512 aaPredicted RBP15.87■□□□□ 0.13
DDB1-212ENST00000538470 TARBP1Q13395 1621 aaKnown RBP15.86■□□□□ 0.13
DDB1-212ENST00000538470 OSCARQ8IYS5 282 aa15.84■□□□□ 0.13
DDB1-212ENST00000538470 POLA1P09884 1462 aaPredicted RBP15.81■□□□□ 0.12
DDB1-212ENST00000538470 WDR97A6NE52 1622 aa15.8■□□□□ 0.12
DDB1-212ENST00000538470 CHD1O14646 1710 aa15.77■□□□□ 0.11
DDB1-212ENST00000538470 TRIM41Q8WV44 630 aa15.75■□□□□ 0.11
DDB1-212ENST00000538470 RIMBP3CA6NJZ7 1639 aa15.75■□□□□ 0.11
DDB1-212ENST00000538470 RIMBP3BA6NNM3 1639 aa15.75■□□□□ 0.11
DDB1-212ENST00000538470 RIMBP3Q9UFD9 1639 aa15.75■□□□□ 0.11
DDB1-212ENST00000538470 FGD5Q6ZNL6 1462 aa15.71■□□□□ 0.11
DDB1-212ENST00000538470 CUX1P39880 1505 aa15.71■□□□□ 0.11
DDB1-212ENST00000538470 AQRO60306 1485 aaKnown RBP eCLIP15.71■□□□□ 0.11e-6■■■□□ 17.7
DDB1-212ENST00000538470 RAD54L2Q9Y4B4 1467 aa15.69■□□□□ 0.1
DDB1-212ENST00000538470 SOGA1O94964 1423 aa15.68■□□□□ 0.1
DDB1-212ENST00000538470 ARHGEF11O15085 1522 aa15.68■□□□□ 0.1
DDB1-212ENST00000538470 MAGI1Q96QZ7 1491 aaPredicted RBP15.63■□□□□ 0.09
DDB1-212ENST00000538470 PBRM1Q86U86 1689 aa15.63■□□□□ 0.09
DDB1-212ENST00000538470 SNAPC4Q5SXM2 1469 aa15.62■□□□□ 0.09
DDB1-212ENST00000538470 TDRD9Q8NDG6 1382 aaKnown RBP15.61■□□□□ 0.09
DDB1-212ENST00000538470 GRIN2BQ13224 1484 aa15.6■□□□□ 0.09
DDB1-212ENST00000538470 SYNJ1O43426 1573 aa15.58■□□□□ 0.09
DDB1-212ENST00000538470 ABCA5Q8WWZ7 1642 aa15.58■□□□□ 0.09
DDB1-212ENST00000538470 CLASP1Q7Z460 1538 aa15.58■□□□□ 0.08
DDB1-212ENST00000538470 SUPT5HO00267 1087 aaKnown RBP15.57■□□□□ 0.08
DDB1-212ENST00000538470 ABCA10Q8WWZ4 1543 aa15.57■□□□□ 0.08
DDB1-212ENST00000538470 BIVM-ERCC5R4GMW8 1640 aa15.57■□□□□ 0.08
DDB1-212ENST00000538470 SYNJ2O15056 1496 aa15.55■□□□□ 0.08
DDB1-212ENST00000538470 TOP2BQ02880 1626 aa15.54■□□□□ 0.08
DDB1-212ENST00000538470 GAPVD1Q14C86 1478 aa15.53■□□□□ 0.08
DDB1-212ENST00000538470 FBLN2P98095 1184 aa15.53■□□□□ 0.08
DDB1-212ENST00000538470 ARAP1Q96P48 1450 aa15.52■□□□□ 0.08
DDB1-212ENST00000538470 WRNQ14191 1432 aaPredicted RBP eCLIP15.49■□□□□ 0.07
DDB1-212ENST00000538470 CHMP7Q8WUX9 453 aaPredicted RBP15.47■□□□□ 0.07
DDB1-212ENST00000538470 ADAMTS12P58397 1594 aa15.46■□□□□ 0.07
DDB1-212ENST00000538470 CYB5RLQ6IPT4 315 aa15.42■□□□□ 0.06
DDB1-212ENST00000538470 GRIN2AQ12879 1464 aa15.41■□□□□ 0.06
DDB1-212ENST00000538470 ERICH3Q5RHP9 1530 aa15.4■□□□□ 0.06
DDB1-212ENST00000538470 CEP170Q5SW79 1584 aa15.36■□□□□ 0.05
DDB1-212ENST00000538470 FHAD1B1AJZ9 1412 aa15.35■□□□□ 0.05
DDB1-212ENST00000538470 NUP160Q12769 1436 aa15.35■□□□□ 0.05
DDB1-212ENST00000538470 SHROOM2Q13796 1616 aa15.34■□□□□ 0.05
DDB1-212ENST00000538470 ERCC6L2Q5T890 1561 aa15.26■□□□□ 0.03
DDB1-212ENST00000538470 RUSC2Q8N2Y8 1516 aa15.25■□□□□ 0.03
DDB1-212ENST00000538470 CUL7Q14999 1698 aa15.24■□□□□ 0.03
DDB1-212ENST00000538470 TRHP20396 242 aaPredicted RBP15.23■□□□□ 0.03
DDB1-212ENST00000538470 KIF27Q86VH2 1401 aa15.18■□□□□ 0.02
DDB1-212ENST00000538470 PRG4Q92954 1404 aaPredicted RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms