Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTC1Q2NKJ3 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTC1Q2NKJ3 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.11■□□□□ 0.01
CTC1Q2NKJ3 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTC1Q2NKJ3 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTC1Q2NKJ3 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15.11■□□□□ 0.01
CTC1Q2NKJ3 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTC1Q2NKJ3 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTC1Q2NKJ3 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CTC1Q2NKJ3 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTC1Q2NKJ3 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTC1Q2NKJ3 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CTC1Q2NKJ3 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CTC1Q2NKJ3 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 SERBP1P2-201ENST00000436888 1164 ntBASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 HINT1-205ENST00000508488 703 ntTSL 2 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTC1Q2NKJ3 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 COL6A4P2-202ENST00000504443 2753 ntBASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 GALC-206ENST00000544807 2528 ntTSL 2 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 PHB-210ENST00000511832 1509 ntTSL 2 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 RN7SL767P-201ENST00000493013 295 ntBASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 IGHV1-12-201ENST00000518307 205 ntBASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 MBP-238ENST00000580402 915 ntTSL 5 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 AL133467.4-201ENST00000602953 725 ntBASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 AC010326.4-201ENST00000604665 891 ntBASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 FUCA1P1-201ENST00000374476 1351 ntBASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CTC1Q2NKJ3 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms