RNA–Protein interactions for RNA: ENST00000538862.6

CDCA3-207, Transcript of cell division cycle associated 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDCA3, Length 1,943 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-207ENST00000538862 NISCHQ9Y2I1 1504 aa31.9■■■□□ 2.7
CDCA3-207ENST00000538862 CCDC180Q9P1Z9 1646 aa28.36■■■□□ 2.13
CDCA3-207ENST00000538862 ABCC9O60706 1549 aa27.95■■■□□ 2.07
CDCA3-207ENST00000538862 DCAF8L2P0C7V8 631 aa26.8■■□□□ 1.88
CDCA3-207ENST00000538862 RB1CC1Q8TDY2 1594 aa26.76■■□□□ 1.87
CDCA3-207ENST00000538862 NACADO15069 1562 aa26.67■■□□□ 1.86
CDCA3-207ENST00000538862 ZCCHC6Q5VYS8 1495 aaKnown RBP26.55■■□□□ 1.84
CDCA3-207ENST00000538862 MYO15BQ96JP2 1530 aa26.43■■□□□ 1.82
CDCA3-207ENST00000538862 DCAF1Q9Y4B6 1507 aa26.31■■□□□ 1.8
CDCA3-207ENST00000538862 UNC13AQ9UPW8 1703 aa26.25■■□□□ 1.79
CDCA3-207ENST00000538862 PABPN1Q86U42 306 aaKnown RBP eCLIP26.13■■□□□ 1.77
CDCA3-207ENST00000538862 BICRAQ9NZM4 1560 aa26■■□□□ 1.75
CDCA3-207ENST00000538862 SCRIBQ14160 1630 aa25.98■■□□□ 1.75
CDCA3-207ENST00000538862 DNAJC5BQ9UF47 199 aa25.76■■□□□ 1.71
CDCA3-207ENST00000538862 SHROOM4Q9ULL8 1493 aa25.57■■□□□ 1.68
CDCA3-207ENST00000538862 EIF4G1Q04637 1599 aaKnown RBP25.31■■□□□ 1.64
CDCA3-207ENST00000538862 CC2D2AQ9P2K1 1620 aa25.25■■□□□ 1.63
CDCA3-207ENST00000538862 CECR2Q9BXF3 1484 aa25.08■■□□□ 1.61
CDCA3-207ENST00000538862 SUPT5HO00267 1087 aaKnown RBP25.02■■□□□ 1.6
CDCA3-207ENST00000538862 SMARCA4P51532 1647 aa24.79■■□□□ 1.56
CDCA3-207ENST00000538862 BAZ1AQ9NRL2 1556 aaPredicted RBP24.71■■□□□ 1.55
CDCA3-207ENST00000538862 ATAD2BQ9ULI0 1458 aa24.66■■□□□ 1.54
CDCA3-207ENST00000538862 MROH2BQ7Z745 1585 aa24.63■■□□□ 1.53
CDCA3-207ENST00000538862 NCAPD3P42695 1498 aa24.62■■□□□ 1.53
CDCA3-207ENST00000538862 SMARCA2P51531 1590 aa24.59■■□□□ 1.53
CDCA3-207ENST00000538862 HMGXB3Q12766 1538 aa24.5■■□□□ 1.51
CDCA3-207ENST00000538862 PEG3Q9GZU2 1588 aa24.49■■□□□ 1.51
CDCA3-207ENST00000538862 BAZ1BQ9UIG0 1483 aaKnown RBP24.46■■□□□ 1.51
CDCA3-207ENST00000538862 CHIC1Q5VXU3 224 aa24.45■■□□□ 1.5
CDCA3-207ENST00000538862 WIZO95785 1651 aa24.39■■□□□ 1.5
CDCA3-207ENST00000538862 RSF1Q96T23 1441 aaPredicted RBP24.29■■□□□ 1.48
CDCA3-207ENST00000538862 NESP48681 1621 aa24.18■■□□□ 1.46
CDCA3-207ENST00000538862 ERCC6Q03468 1493 aa24.06■■□□□ 1.44
CDCA3-207ENST00000538862 TOP2AP11388 1531 aaKnown RBP24.05■■□□□ 1.44
CDCA3-207ENST00000538862 LAMC3Q9Y6N6 1575 aa23.99■■□□□ 1.43
CDCA3-207ENST00000538862 CADPSQ9ULU8 1353 aa23.92■■□□□ 1.42
CDCA3-207ENST00000538862 KIF21AQ7Z4S6 1674 aa23.88■■□□□ 1.41
CDCA3-207ENST00000538862 PDS5BQ9NTI5 1447 aa23.84■■□□□ 1.41
CDCA3-207ENST00000538862 CCDC88BA6NC98 1476 aa23.79■■□□□ 1.4
CDCA3-207ENST00000538862 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
CDCA3-207ENST00000538862 CUX2O14529 1486 aa23.77■■□□□ 1.4
CDCA3-207ENST00000538862 CFTRP13569 1480 aa23.76■■□□□ 1.39
CDCA3-207ENST00000538862 FANCD2Q9BXW9 1451 aa23.68■■□□□ 1.38
CDCA3-207ENST00000538862 HRCP23327 699 aa23.67■■□□□ 1.38
CDCA3-207ENST00000538862 CEP164Q9UPV0 1460 aa23.65■■□□□ 1.38
CDCA3-207ENST00000538862 MRC2Q9UBG0 1479 aa23.62■■□□□ 1.37
CDCA3-207ENST00000538862 PRDM2Q13029 1718 aa23.61■■□□□ 1.37
CDCA3-207ENST00000538862 LOC105371045A0A1W2PR82 267 aa23.59■■□□□ 1.37
CDCA3-207ENST00000538862 PCGF6Q9BYE7 350 aa23.56■■□□□ 1.36
CDCA3-207ENST00000538862 WDR62O43379 1518 aa23.55■■□□□ 1.36
CDCA3-207ENST00000538862 URB2Q14146 1524 aaKnown RBP23.47■■□□□ 1.35
CDCA3-207ENST00000538862 TRIM41Q8WV44 630 aa23.41■■□□□ 1.34
CDCA3-207ENST00000538862 TOPBP1Q92547 1522 aa23.29■■□□□ 1.32
CDCA3-207ENST00000538862 TRIM26Q12899 539 aaPredicted RBP23.27■■□□□ 1.32
CDCA3-207ENST00000538862 DNMBPQ6XZF7 1577 aa23.24■■□□□ 1.31
CDCA3-207ENST00000538862 ABCC8Q09428 1581 aa23.2■■□□□ 1.3
CDCA3-207ENST00000538862 DNAJC5Q9H3Z4 198 aa23.18■■□□□ 1.3
CDCA3-207ENST00000538862 IFT140Q96RY7 1462 aa23.12■■□□□ 1.29
CDCA3-207ENST00000538862 ZNF608Q9ULD9 1512 aaPredicted RBP23.11■■□□□ 1.29
CDCA3-207ENST00000538862 CUX1P39880 1505 aa23.1■■□□□ 1.29
CDCA3-207ENST00000538862 POLA1P09884 1462 aaPredicted RBP23.1■■□□□ 1.29
CDCA3-207ENST00000538862 FAM9AQ8IZU1 332 aaPredicted RBP23.06■■□□□ 1.28
CDCA3-207ENST00000538862 TARBP1Q13395 1621 aaKnown RBP23.05■■□□□ 1.28
CDCA3-207ENST00000538862 RAD54L2Q9Y4B4 1467 aa23.04■■□□□ 1.28
CDCA3-207ENST00000538862 FGD5Q6ZNL6 1462 aa23.03■■□□□ 1.28
CDCA3-207ENST00000538862 EIF4G3O43432 1585 aaKnown RBP23■■□□□ 1.27
CDCA3-207ENST00000538862 SOGA1O94964 1423 aa22.98■■□□□ 1.27
CDCA3-207ENST00000538862 PPARGC1BQ86YN6 1023 aaKnown RBP22.98■■□□□ 1.27
CDCA3-207ENST00000538862 AQRO60306 1485 aaKnown RBP eCLIP22.97■■□□□ 1.277e-7■■■■□ 24.1
CDCA3-207ENST00000538862 TDRD9Q8NDG6 1382 aaKnown RBP22.91■■□□□ 1.26
CDCA3-207ENST00000538862 WRNQ14191 1432 aaPredicted RBP eCLIP22.89■■□□□ 1.26
CDCA3-207ENST00000538862 SYNJ1O43426 1573 aa22.89■■□□□ 1.25
CDCA3-207ENST00000538862 ZEB1P37275 1124 aaPredicted RBP22.85■■□□□ 1.25
CDCA3-207ENST00000538862 TOP2BQ02880 1626 aa22.85■■□□□ 1.25
CDCA3-207ENST00000538862 BIVM-ERCC5R4GMW8 1640 aa22.85■■□□□ 1.25
CDCA3-207ENST00000538862 WDR97A6NE52 1622 aa22.84■■□□□ 1.25
CDCA3-207ENST00000538862 OSCARQ8IYS5 282 aa22.8■■□□□ 1.24
CDCA3-207ENST00000538862 ABCA10Q8WWZ4 1543 aa22.77■■□□□ 1.23
CDCA3-207ENST00000538862 CHD1O14646 1710 aa22.76■■□□□ 1.23
CDCA3-207ENST00000538862 FBLN2P98095 1184 aa22.74■■□□□ 1.23
CDCA3-207ENST00000538862 SNAPC4Q5SXM2 1469 aa22.74■■□□□ 1.23
CDCA3-207ENST00000538862 EHMT2Q96KQ7 1210 aa22.73■■□□□ 1.23
CDCA3-207ENST00000538862 GAPVD1Q14C86 1478 aa22.72■■□□□ 1.23
CDCA3-207ENST00000538862 PBRM1Q86U86 1689 aa22.71■■□□□ 1.23
CDCA3-207ENST00000538862 GRIN2BQ13224 1484 aa22.71■■□□□ 1.23
CDCA3-207ENST00000538862 ABCA5Q8WWZ7 1642 aa22.7■■□□□ 1.23
CDCA3-207ENST00000538862 MAGI1Q96QZ7 1491 aaPredicted RBP22.64■■□□□ 1.21
CDCA3-207ENST00000538862 EEA1Q15075 1411 aa22.6■■□□□ 1.21
CDCA3-207ENST00000538862 CHMP7Q8WUX9 453 aaPredicted RBP22.6■■□□□ 1.21
CDCA3-207ENST00000538862 SYNJ2O15056 1496 aa22.57■■□□□ 1.2
CDCA3-207ENST00000538862 ADAMTS12P58397 1594 aa22.5■■□□□ 1.19
CDCA3-207ENST00000538862 RIMBP3CA6NJZ7 1639 aa22.5■■□□□ 1.19
CDCA3-207ENST00000538862 RIMBP3BA6NNM3 1639 aa22.5■■□□□ 1.19
CDCA3-207ENST00000538862 RIMBP3Q9UFD9 1639 aa22.5■■□□□ 1.19
CDCA3-207ENST00000538862 TNIKQ9UKE5 1360 aa22.5■■□□□ 1.19
CDCA3-207ENST00000538862 ERICH3Q5RHP9 1530 aa22.48■■□□□ 1.19
CDCA3-207ENST00000538862 ARHGEF11O15085 1522 aa22.47■■□□□ 1.19
CDCA3-207ENST00000538862 CSRNP3Q8WYN3 585 aa22.45■■□□□ 1.18
CDCA3-207ENST00000538862 CEP162Q5TB80 1403 aa22.45■■□□□ 1.18
CDCA3-207ENST00000538862 CLASP1Q7Z460 1538 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms