Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ARHGAP12-205ENST00000396144 5084 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.473e-6■□□□□ 8.2
YBX3P16989 SMIM26-201ENST00000411646 505 ntAPPRIS P5 TSL 1 (best) BASIC12□□□□□ -0.493e-6■□□□□ 8.2
YBX3P16989 BPNT1-210ENST00000544404 2379 ntTSL 2 BASIC11.72□□□□□ -0.533e-6■□□□□ 8.2
YBX3P16989 ARHGAP12-202ENST00000344936 4128 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.573e-6■□□□□ 8.2
YBX3P16989 TP53BP2-214ENST00000498843 2781 ntTSL 211.35□□□□□ -0.593e-6■□□□□ 8.2
YBX3P16989 QRICH1-212ENST00000498392 2362 ntTSL 211.24□□□□□ -0.613e-6■□□□□ 8.2
YBX3P16989 AFDN-207ENST00000400822 7593 ntTSL 5 BASIC11.05□□□□□ -0.643e-6■□□□□ 8.2
YBX3P16989 POLB-211ENST00000521492 786 ntTSL 2 BASIC10.79□□□□□ -0.683e-6■□□□□ 8.2
YBX3P16989 SEC24D-209ENST00000509818 1870 ntTSL 1 (best)10.6□□□□□ -0.713e-6■□□□□ 8.2
YBX3P16989 AFDN-221ENST00000511637 5999 ntTSL 1 (best)10.57□□□□□ -0.723e-6■□□□□ 8.2
YBX3P16989 BPNT1-203ENST00000414869 2357 ntTSL 2 BASIC10.41□□□□□ -0.743e-6■□□□□ 8.2
YBX3P16989 KLHL8-202ENST00000425278 4049 ntTSL 1 (best) BASIC10.39□□□□□ -0.753e-6■□□□□ 8.2
YBX3P16989 WSB2-209ENST00000543186 393 ntTSL 310.33□□□□□ -0.763e-6■□□□□ 8.2
YBX3P16989 PKD1-203ENST00000423118 14135 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.773e-6■□□□□ 8.2
YBX3P16989 PKD1-201ENST00000262304 14138 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.783e-6■□□□□ 8.2
YBX3P16989 BPNT1-204ENST00000463953 644 ntTSL 310.09□□□□□ -0.793e-6■□□□□ 8.2
YBX3P16989 AFDN-204ENST00000366809 4839 ntTSL 1 (best)10.09□□□□□ -0.793e-6■□□□□ 8.2
YBX3P16989 BPNT1-205ENST00000469520 2737 ntAPPRIS P1 TSL 5 BASIC9.96□□□□□ -0.823e-6■□□□□ 8.2
YBX3P16989 TP53BP2-209ENST00000483398 1841 ntTSL 29.94□□□□□ -0.823e-6■□□□□ 8.2
YBX3P16989 DCTN2-206ENST00000546965 542 ntTSL 49.91□□□□□ -0.823e-6■□□□□ 8.2
YBX3P16989 UBE2V1-211ENST00000467839 566 ntTSL 29.74□□□□□ -0.853e-6■□□□□ 8.2
YBX3P16989 BPNT1-201ENST00000322067 2465 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.853e-6■□□□□ 8.2
YBX3P16989 WSB2-212ENST00000614776 687 nt9.45□□□□□ -0.93e-6■□□□□ 8.2
YBX3P16989 POLB-210ENST00000521418 628 ntTSL 29.32□□□□□ -0.923e-6■□□□□ 8.2
YBX3P16989 STAMBP-209ENST00000486458 1012 ntTSL 39.04□□□□□ -0.963e-6■□□□□ 8.2
YBX3P16989 KLHL8-208ENST00000512111 3245 ntAPPRIS P1 TSL 2 BASIC9.03□□□□□ -0.963e-6■□□□□ 8.2
YBX3P16989 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.993e-6■□□□□ 8.2
YBX3P16989 KLHL8-203ENST00000498875 5175 ntTSL 1 (best) BASIC8.74□□□□□ -1.013e-6■□□□□ 8.2
YBX3P16989 UBE2V1-216ENST00000483534 1155 ntTSL 1 (best)8.68□□□□□ -1.023e-6■□□□□ 8.2
YBX3P16989 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC8.47□□□□□ -1.053e-6■□□□□ 8.2
YBX3P16989 ARHGAP12-204ENST00000375250 4914 ntTSL 1 (best) BASIC8.47□□□□□ -1.053e-6■□□□□ 8.2
YBX3P16989 POLB-203ENST00000518579 744 ntTSL 58.24□□□□□ -1.093e-6■□□□□ 8.2
YBX3P16989 UBE2V1-219ENST00000490555 549 ntTSL 48.21□□□□□ -1.13e-6■□□□□ 8.2
YBX3P16989 SEPT7-208ENST00000475109 733 ntTSL 58.05□□□□□ -1.123e-6■□□□□ 8.2
YBX3P16989 UBE2V1-208ENST00000432266 569 ntTSL 47.67□□□□□ -1.183e-6■□□□□ 8.2
YBX3P16989 KLHL8-207ENST00000506985 2399 ntTSL 1 (best)7.66□□□□□ -1.183e-6■□□□□ 8.2
YBX3P16989 SEPT7-215ENST00000635047 760 ntTSL 47.63□□□□□ -1.193e-6■□□□□ 8.2
YBX3P16989 CHRAC1-205ENST00000523569 618 ntTSL 27.53□□□□□ -1.23e-6■□□□□ 8.2
YBX3P16989 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC7.45□□□□□ -1.223e-6■□□□□ 8.2
YBX3P16989 UBE2V1-220ENST00000492371 535 ntTSL 37.43□□□□□ -1.223e-6■□□□□ 8.2
YBX3P16989 UBE2V1-221ENST00000493090 563 ntTSL 47.43□□□□□ -1.223e-6■□□□□ 8.2
YBX3P16989 CHRAC1-204ENST00000519618 811 ntTSL 37.18□□□□□ -1.263e-6■□□□□ 8.2
YBX3P16989 SEPT7-204ENST00000425198 6952 ntTSL 56.94□□□□□ -1.33e-6■□□□□ 8.2
YBX3P16989 TIPARP-206ENST00000495891 2700 ntTSL 1 (best)6.78□□□□□ -1.323e-6■□□□□ 8.2
YBX3P16989 UBE2V1-210ENST00000462217 1095 ntTSL 56.75□□□□□ -1.333e-6■□□□□ 8.2
YBX3P16989 NCOA1-208ENST00000483904 711 ntTSL 36.54□□□□□ -1.363e-6■□□□□ 8.2
YBX3P16989 UBE2V1-213ENST00000470565 728 ntTSL 36.19□□□□□ -1.423e-6■□□□□ 8.2
YBX3P16989 GTF2E2-203ENST00000518599 737 ntTSL 56.11□□□□□ -1.433e-6■□□□□ 8.2
YBX3P16989 Y_RNA.257-201ENST00000364596 102 ntBASIC6.09□□□□□ -1.433e-6■□□□□ 8.2
YBX3P16989 SEPT7-217ENST00000635175 1464 ntTSL 25.86□□□□□ -1.473e-6■□□□□ 8.2
YBX3P16989 UBE2V1-209ENST00000461960 649 ntTSL 55.68□□□□□ -1.53e-6■□□□□ 8.2
YBX3P16989 TIPARP-204ENST00000481853 2035 ntTSL 1 (best)5.65□□□□□ -1.53e-6■□□□□ 8.2
YBX3P16989 CDC42BPA-213ENST00000488131 1859 ntTSL 55.42□□□□□ -1.543e-6■□□□□ 8.2
YBX3P16989 SEPT7-213ENST00000634600 583 ntTSL 25.22□□□□□ -1.573e-6■□□□□ 8.2
YBX3P16989 CDC42BPA-207ENST00000441725 2183 ntTSL 55.19□□□□□ -1.583e-6■□□□□ 8.2
YBX3P16989 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.593e-6■□□□□ 8.2
YBX3P16989 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.653e-6■□□□□ 8.2
YBX3P16989 UBE2V1-214ENST00000472923 421 ntTSL 54.69□□□□□ -1.663e-6■□□□□ 8.2
YBX3P16989 KLHL8-205ENST00000505388 606 ntTSL 44.63□□□□□ -1.673e-6■□□□□ 8.2
YBX3P16989 POLB-202ENST00000517393 401 ntTSL 34.62□□□□□ -1.673e-6■□□□□ 8.2
YBX3P16989 PCM1-215ENST00000522275 2379 ntTSL 24.54□□□□□ -1.683e-6■□□□□ 8.2
YBX3P16989 RFX7-202ENST00000559847 4165 ntTSL 1 (best)4.32□□□□□ -1.723e-6■□□□□ 8.2
YBX3P16989 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.16□□□□□ -1.743e-6■□□□□ 8.2
YBX3P16989 GTF2E2-202ENST00000518445 426 ntTSL 54.11□□□□□ -1.753e-6■□□□□ 8.2
YBX3P16989 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.77□□□□□ -1.813e-6■□□□□ 8.2
YBX3P16989 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.15□□□□□ -1.913e-6■□□□□ 8.2
YBX3P16989 CAPN1-205ENST00000526954 754 ntTSL 520.43■□□□□ 0.863e-6■□□□□ 8.2
YBX3P16989 FBXO18-208ENST00000470089 979 ntTSL 538.41■■■■□ 3.743e-6■□□□□ 8.1
YBX3P16989 E2F4-206ENST00000565849 639 ntTSL 335.49■■■■□ 3.273e-6■□□□□ 8.1
YBX3P16989 E2F4-213ENST00000569573 849 ntTSL 335.3■■■■□ 3.243e-6■□□□□ 8.1
YBX3P16989 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.73e-6■□□□□ 8.1
YBX3P16989 AURKAIP1-205ENST00000489799 695 ntTSL 1 (best)30.64■■■□□ 2.55e-9■□□□□ 8.1
YBX3P16989 PAIP1-204ENST00000504075 501 ntTSL 330.6■■■□□ 2.493e-6■□□□□ 8.1
YBX3P16989 E2F4-210ENST00000568485 707 ntTSL 230.47■■■□□ 2.473e-6■□□□□ 8.1
YBX3P16989 CAPN1-222ENST00000532285 568 ntTSL 430.11■■■□□ 2.413e-6■□□□□ 8.1
YBX3P16989 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.373e-6■□□□□ 8.1
YBX3P16989 LSM6-203ENST00000503982 820 ntTSL 229.58■■■□□ 2.333e-6■□□□□ 8.1
YBX3P16989 PAIP1-206ENST00000508537 752 ntTSL 229.24■■■□□ 2.273e-6■□□□□ 8.1
YBX3P16989 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC28.96■■■□□ 2.233e-6■□□□□ 8.1
YBX3P16989 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC28.29■■■□□ 2.123e-6■□□□□ 8.1
YBX3P16989 ZNF24-203ENST00000589539 578 ntTSL 327.6■■■□□ 2.013e-6■□□□□ 8.1
YBX3P16989 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC27.13■■□□□ 1.933e-6■□□□□ 8.1
YBX3P16989 SNX11-209ENST00000581705 1426 ntTSL 226.8■■□□□ 1.883e-6■□□□□ 8.1
YBX3P16989 RPS19BP1-203ENST00000459956 852 ntTSL 226.71■■□□□ 1.873e-6■□□□□ 8.1
YBX3P16989 SMYD5-204ENST00000443900 584 ntTSL 426.67■■□□□ 1.863e-6■□□□□ 8.1
YBX3P16989 CAPN1-206ENST00000526966 550 ntTSL 426.01■■□□□ 1.753e-6■□□□□ 8.1
YBX3P16989 CAPN1-211ENST00000527739 582 ntTSL 426.01■■□□□ 1.753e-6■□□□□ 8.1
YBX3P16989 LSM6-207ENST00000515311 545 ntTSL 425.82■■□□□ 1.723e-6■□□□□ 8.1
YBX3P16989 AURKAIP1-206ENST00000496905 608 ntTSL 225.08■■□□□ 1.615e-9■□□□□ 8.1
YBX3P16989 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC25.05■■□□□ 1.63e-6■□□□□ 8.1
YBX3P16989 RPS19BP1-202ENST00000420879 861 ntTSL 224.55■■□□□ 1.523e-6■□□□□ 8.1
YBX3P16989 E2F4-202ENST00000561904 897 ntTSL 324.4■■□□□ 1.53e-6■□□□□ 8.1
YBX3P16989 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC24.16■■□□□ 1.463e-6■□□□□ 8.1
YBX3P16989 SMYD5-201ENST00000258100 786 ntTSL 524.14■■□□□ 1.453e-6■□□□□ 8.1
YBX3P16989 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.91■■□□□ 1.423e-6■□□□□ 8.1
YBX3P16989 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC23.23■■□□□ 1.313e-6■□□□□ 8.1
YBX3P16989 SPNS1-206ENST00000564476 890 ntTSL 323.08■■□□□ 1.293e-6■□□□□ 8.1
YBX3P16989 PAIP1-205ENST00000504639 1766 ntTSL 523.04■■□□□ 1.283e-6■□□□□ 8.1
YBX3P16989 SPNS1-208ENST00000566059 1615 ntTSL 522.71■■□□□ 1.233e-6■□□□□ 8.1
YBX3P16989 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.223e-6■□□□□ 8.1
Retrieved 100 of 29,075 protein–RNA pairs in 551 ms